barSeed - Barley Seed Development Database

Probe CUST_6281_PI390587928

Source Contig U35_19116

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6281_PI390587928	Hv_44K_v2	AGCCATAGGACCTGTGCCCAGAAGCGTTTTTTCTTACTCATGTAAATATATACACATGAT	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374946	1749	2e-24	1649 - 1708	100	60 / 60	plus	ABC10881
MLOC	MLOC_65734.1	1826	2e-24	1354 - 1413	100	60 / 60	plus	ABC10881
JLOC1	JLOC1_43275.1	1356	8e-25	1212 - 1271	100	60 / 60	plus
Harvest21	ABC10881	576	3e-25	465 - 524	100	60 / 60	plus	ABC10881
Harvest35	U35_19116	576	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_19116 576 Hv_44K_v2
TAGTCACTGTATGTGCACCAATATGGGAAGAGATTGTGTTCCGTGGTTTCCTCCTCCCAT
CTCTAACGCGATACATGCCTCTTCCATGGTCGATCTTGCTAAGTGCCGCAGCGTTTGCAC
TGGCGCACTTCAACGTGCAAAGGGTGTTGCCGTTAATATTTCTTGGGGTTGTGATGGGAG
GTGTCTTTGCCAGATCACGCAACCTATTGGCATCGATCGTGCTCCATAGCCTTTGGAACG
GTTTTGTATTCCTGGATTTGATGAAGTGAGCTATGATGATATTGTTGTCCAGCTTTCGAT
ATCTACCTTTGTGTTATCATTGTGCACGGAGAGAAAAGAAGCTAACGAAGGGTGGTGGTC
AGATTGTTTATGTAGAACAAATCATGCAGAGACAAGAGATGTTCAGTGGAGATTAGACAA
CATCGAACGGATTTTTTGAAGATTTTTGTGTAGTGTCAGAATATAGCCATAGGACCTGTG
CCCAGAAGCGTTTTTTCTTACTCATGTAAATATATACACATGATAATAATTACCTAATCG
TATATAGAATTACCAATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19116 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None