barSeed - Barley Seed Development Database

Probe CUST_6280_PI390587928

Source Contig U35_19117

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6280_PI390587928	Hv_44K_v2	ATGTGCCCAGAAATACAAATTCCTTGATATATGTTGTCCAGTGGCTTGCCTAGCTCCAAA	799	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.247	1.090	1.086	1.113	0.474	0.336
Raw	35.284	48.515	42.263	68.072	10.003	7.821

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361819	1784	7e-23	1728 - 1784	100	57 / 57	plus	ABC10881
MLOC	MLOC_15023.1	715	7e-23	640 - 696	100	57 / 57	plus	ABC10881
JLOC1	JLOC1_10284.1	699	4e-23	640 - 696	100	57 / 57	plus
Harvest21	ABC10882	848	3e-25	789 - 848	100	60 / 60	plus
Harvest35	U35_19117	859	3e-25	800 - 859	100	60 / 60	plus

Contig Sequence (859 bp)

>U35_19117 859 Hv_44K_v2
TGAGTTCAAATTAAAGGGCAGATGGCATTGGGATGTAGCGTTGGGGTGCCTGTTATTCCC
ACTGGTCAATTTGCTTTCTCACATCAACATCAGCCTAGTTCATATGTCATCAGGGCCAGT
CGCCGGGGTGTCAAGTGTAGAGCAATCCATTGTGGCCCGTGACCCGGTGGCAATGGCCTT
GTATGCCGTGGTAGTCACTGTATGTGCACCTATATGGGAAGAGATTGTATTCCGTGGTTT
CCTTCTCCCATCTCTAACACGATACATGCCTCTTCCATGGTCGATCTTGCTAAGTGCCGC
GGCGTTTGCGCTGGCGCACTTCAACGTGCAAAGGGTGTTGCCGTTGATATTTCTCGGGGT
TGTGATGGGAGGCGTATTTGCCAGATCACGCAACCTATTGGCATCAATGGTGCTTCATAG
CCTTTGGAACGGTTTTGTATTCCTGGATTTGATGAAGTGAGCTATGACGGTATTGTTGTC
CGGCTTGTCGATGTCTCCTGTGGAGTTTCCTCCTTCCTTTGTGTTTTCATTTGGCATGGA
GAGTAAGTATAAAGAAGCTGTTTTCATTTGGCATGGAGAGTAAGTATAAAGAAGCTAACG
AAGGGTGGCGCTCAGGTTGTTTTATGTGGAGAACAGACAAACAGAAGAACATTTTGAAGA
TTTTTGTGTAGGGGTCAGATAGCCATAGTACTTGTGCCCAGAAGCATGTTTCTTACTCGC
ATAAATTATATATGCGCGGGATGCCTCCTCGTGTATATAATTCCCCATTCATATGTAATT
GTGCATTTTGTTCTTCATTATGTGCCCAGAAATACAAATTCCTTGATATATGTTGTCCAG
TGGCTTGCCTAGCTCCAAA

Homology of Contig U35_19117 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g30910.1	367	8e-85	protein\|CAAX amino terminal protease family protein, putative, expressed
Brachypodium v1_2	Bradi1g39363.1	234	2e-92
Arabidopsis v10	AT5G60750.1	347	1e-62	CAAX amino terminal protease family protein \| chr5:24431072-24433199 FORWARD LENGTH=347