barSeed - Barley Seed Development Database

Probe CUST_6274_PI390587928

Source Contig U35_21433

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6274_PI390587928	Hv_44K_v2	CTCCTACAAATGTGAATGATGTGTTTGCTGTACTTGTTCAGCTGCCCCCTTGAAAATGAG	1107	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.334	1.449	1.114	0.848	0.364	0.500
Raw	643.797	1085.573	737.251	874.774	132.226	197.994

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_36712.2	2941	6e-21	2884 - 2941	97	58 / 60	plus
JLOC1	JLOC1_36712.1	2928	6e-21	2871 - 2928	97	58 / 60	plus
Harvest21	ABC14552	1177	3e-25	11 - 70	100	60 / 60	minus	ABC14552
Harvest35	U35_21433	1177	3e-25	1108 - 1167	100	60 / 60	plus

Contig Sequence (1177 bp)

>U35_21433 1177 Hv_44K_v2
GTCCAGATAGAAGCTCTAACAAGCATGTCTCGGTTCCACTCAATACCAATATTTCTGATA
CTCCAAACCGCCATTCGATCTCTTTCTGTGAAAACAGTACACCAAAGCAAGGCATCTCAA
ATTCACCTTCGATGGCCGAAACGCCGGCAATGCAGACACCAAAAAGGCCATTGCCCACTC
CAGTTGCGAAACATGAAACCTCAAGTAGACATGGCTCTGAAGCACGATCTAACAATTCAG
CTCGCAGATCACTAATAATGTTCTCACCATCAAAGTTTAATGAAAGCCCTTCTGCCACTG
ATGCTGACACATCAAAACTTGACAAGGATGGGGTGTCCTCTATCACAGAACCTGAGGTTA
CAACTGGAAAATGCCTTTTCCCAGAAGAAACAGTTACTTTTACTGACCTATTGTTGGAAA
ATGATAACAAAACCGTTCAAGTATCCTCAACGAATTCCCAGGAAAAGCTAGATTCTTTAC
GTGTCACATTCGACGTAGTCTGTGGTATCTCTGGATCTACCAAGAATTCACTAATCACTA
AACAGGAACTCTTTCACAATATTCTTGCTAATAACTTGGAGATAGAAGAGACAGGAGAGA
TAGAAGAGCAGTTGCATATCTTAGAGGATCTGTCTCCTGATTGGATATCTAAGGAGCTAC
GTGGTGGAGAAATTCTTTACAGCTTCAAGCAAATATCAGATCAGAAGTCAGTTCGGGAAA
GACTCACAGAAGTCATTTGAGATGAGACAATCTGTGCAAAGCCGAAGAACCTAAAGCTGT
ATGTACTGATTTCTCGGGATTTGACCAGCATGGAATCATCTGGATTGCACATCTAGTGCT
TTACTGAAATACTAAGCATCAACAAGCGCGGATAAATTCTTCATGCTTTTGCCTGGCCCC
TGATTTAGCTGCTCCATTTGTTGATTTTATGCTTAATGCTGGAATTGAACTGAGTTGTAA
CGTGAGTTGAATTTGCATCATGTAGCATTGAACTCTTCTTTCTTACCATTTGCTGAATGC
TGTAACTTAGATGCAACCGTGCAAGAGAAATTCGACTAAATGTTTTCTATGGTGTTAACT
GGCAATGTCTGTGAACACTTTAAGTTACTCCTACAAATGTGAATGATGTGTTTGCTGTAC
TTGTTCAGCTGCCCCCTTGAAAATGAGNNTGTATAGC

Homology of Contig U35_21433 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34820.2	574	2e-79	protein\|CDT1B - Putative DNA replication initiation protein, expressed
Brachypodium v1_2	Bradi3g29590.1	557	2e-102
Arabidopsis v10	None