barSeed - Barley Seed Development Database

Probe CUST_6269_PI390587928

Source Contig U35_21438

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6269_PI390587928	Hv_44K_v2	TTCATGTGTAAGCATTTGACATTGAGCAATTGGATCTTGGTGCCTGAATCAGTGAAAAAA	640	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.658	2.184	1.309	0.798	0.354	0.251
Raw	276.814	388.896	190.480	180.344	29.111	22.412

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7176.2	877	3e-22	740 - 795	100	56 / 56	plus	ABC16109
JLOC1	JLOC1_4734.1	606	1e-22	486 - 541	100	56 / 56	plus
Harvest21	ABC16109	708	3e-25	12 - 71	100	60 / 60	minus	ABC16109
Harvest35	U35_21438	711	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (711 bp)

>U35_21438 711 Hv_44K_v2
CAGACGGACATGGACTACGCGTGCTCGCAGGTGGGCGTGGACTGCGGCGCCATCCAGCCC
GGGGGCGCGTGCTTCGAGCCCAACACGGTGCGCGCCCACGCCGCCTACGCCATGAACCAG
CTCTACCAGGCCGCCGGCAGCCACCCATGGAACTGCGACTTCCGGCAGTCCGCCACCCTC
ACCTCCACCAACCCCAGCTACGGCTCGTGTGTCTTCACCGGAGGCCAATGATGCAATGCA
ACTCAACTCAAAAAATTCTTCCGGCCGTGATGGTGCGGTGAGCGCCATGATTGGATCGAA
TCATCATCGAGTAAAGCCACGAAACAGTGGGCGGTGGTTGTGCGCGGGATGCGTTGCTGC
ATACGCATCGCATCCCCCATGTTTTCATTTCGTTTCATTCCATATATCCTTGCAGCCGAG
CAATTCTTTTTAGATCTAGAGATGGCGTGTGCTGTACGATGTACACGCCCAATCCTTTTC
TACCTGCCTTGGTCTTGGTGTGTACTGTACAATGTACATGGGTGGTGTGTGGTGACGAGC
TTTGTGTGCTTCGTGCGTGTGTGTGTGTGTGTGTGTTTGTGTGTACGCCCGTAACTTGGA
TTGCTGGTAGAGTGTTGTACGTAGTATTATTTGTTCGGCGTTCATGTGTAAGCATTTGAC
ATTGAGCAATTGGATCTTGGTGCCTGAATCAGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21438 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None