barSeed - Barley Seed Development Database

Probe CUST_6265_PI390587928

Source Contig U35_19120

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6265_PI390587928	Hv_44K_v2	TTGAGAAACACGGAGAAACTTTTTGTGGACTGAGCATTTTTGATCAATGCAGAATTCTTT	1067	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44165.1	414	7e-23	173 - 232	98	59 / 60	plus	ABC10327
JLOC1	JLOC1_28596.1	2206	4e-23	2139 - 2198	98	59 / 60	plus
Harvest21	ABC10327	1127	3e-25	1068 - 1127	100	60 / 60	plus	ABC10327
Harvest35	U35_19120	1127	3e-25	1068 - 1127	100	60 / 60	plus

Contig Sequence (1127 bp)

>U35_19120 1127 Hv_44K_v2
GGGATTTCGGAGTGAACATGCAAGCTGGGTTTTTGCTGTTTGGACCTCCAGGCTGTGGGA
AAACTCTAATAGCAAAAGCAGTTGCGCATGATGCAGGGGCAAATTTTATTCACATTAAGG
GGCCTGAGCTACTGAACAAGTATGTTGGGGAGAGTGAATCAGAAGTAAGGAAAATATTCA
CCCGTGCAAGGATTAACTCTCCATGCATCCTATTTTTCGACGAGATAGATGCTCTGACAA
CAAAAAGAGGGAAAGAGGGAGGATGGGTTGTTGAACGCCTCCTAAACCAGTTACTTGTTG
AACTCGATGGTGCAGATCAGCGTCATGGTGTTTATGTTATTGGAGCTACGAACAGAATTG
ATGTTATAGATGAGGCTGTTCTACGGCCTGGTAGATTTGGGAAGAAACATTTTGTACCTT
TACCTGGTGCTGATGAGCGGGTTGCGATATTGAAAGCACATACTGAAAAGAAAACTCTCT
CGGAAGATGTTGATTTGGAAACAATTGCACGTCGAGAGGAGTGCAATAATCTCACTGGTG
CTGACCTGGCATCACTGGTGAACGAAGCAGCCATGGCAGCGTTGGAAGAGAGGTGCGAAT
TCCTGGCGAAAGGGGACTCGTCAATGAGTACTGACTTGACTAATAAGATAAAACTGCAGC
ACTTTGAGCATGCTCTATCTAAAGTAAAGCCCTCAGTATCAGAACAGCAAAGGAAACACT
TCGACGCGCTGTCAAAGAAATATTCAGCCAACTGATCCATCGCCGTGCTTACAAGGACCA
TACTGTAGCCTTGTTTCTACTTCCCCTGTTCCAAAATAAATGTCTCAACCTTGTACTAGC
TCTAGTATAAAATTGTACTAAGCCTCTAGACAATTATTTTGGGGCGGAGGGAGTATTATT
TTTGCTCATACCATAGCTTGGTGTAGAGATTGCGTGTGCTGACCCTCTACACTAAAGCTA
TGCAATTTTGGTAGTGAGGGACTTGTTTTCGGTGTTTGGAAAATATGAACTCGTTATGCT
TGTTGTACGGCTTTTACCGGTGCTCCGTCCCCTTGTAATGTTTTGAATTGAGAAACACGG
AGAAACTTTTTGTGGACTGAGCATTTTTGATCAATGCAGAATTCTTT

Homology of Contig U35_19120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01980.1	771	6e-132	protein\|AAA family ATPase, putative, expressed
Brachypodium v1_2	Bradi1g51940.2	784	1e-146
Arabidopsis v10	AT3G01610.1	820	7e-92	\| Symbols: CDC48C, emb1354 \| cell division cycle 48C \| chr3:231787-235057 FORWARD LENGTH=820