barSeed - Barley Seed Development Database

Probe CUST_6261_PI390587928

Source Contig U35_11503

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6261_PI390587928	Hv_44K_v2	AAATTTGTCAAGGAGTTTTTTGACCTTATTGATGCCGCAGATGCCACTGGCCAGGCTGAA	700	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364738	4540	2e-24	3174 - 3233	100	60 / 60	plus	ABC15231
MLOC	MLOC_79615.1	1294	2e-24	1023 - 1082	100	60 / 60	plus	None
JLOC1	JLOC1_53019.1	1244	8e-25	671 - 730	100	60 / 60	plus
Harvest21	ABC25711	835	3e-25	701 - 760	100	60 / 60	plus
Harvest35	U35_11503	835	3e-25	701 - 760	100	60 / 60	plus

Contig Sequence (835 bp)

>U35_11503 835 Hv_44K_v2
TCTTATCACAGTCGAAGGTCCGCAGGTCACAGCAAGTGAAAAAATATCATTAAGACCTCC
TATGTTGCAGGTTGTTCGTTTAGCCTCCTTTCAGCATGCACCGTCAATACCACCGTTTAT
AGTGCCTAAGCAATCCAAATTAAATGGGGATGATTCAGTATTTCTGAAAGAATTGGATGA
TAGAAGATATTCTGAAGTGGCTGTTGCTGGAGGAGGGGTATCGGTTGCAGTAACTCGCTT
TCCTTCTGAGCAGAAAAGACCTATTGGGCCACTTGTCCTGGTTGGTGTCAGAGATGGAGT
TCTGTGGCTTGTTGACAGGTATATGTGTGCACATGCCTTGTCTCTCAGCCATCCCGGTAT
TAGATGTCGGTGCCTTGCAGCATATGGAGACCCAGTTAGTGCTGTGAAATGGGCTACTAG
ACTTGGCCGAGAGCACCATGATGACCTTGCTCAGTTTATGCTTGGAATGGGCTATGCTAC
TGAAGCACTTCATTTACCTGGAATATCCAAGAGGTTGGAATTCGATCTTGCAATGCAAAG
CAAGGACTTGAAAAGAGCACTTGCATGTCTGCTGACAATGAGCAATAGCCGAGATGTGGG
ACAAGAAACTACTGCTACTGATGTTACGCAGATTCTCAATTTAGCAGTAGCTAAGCAGGC
TAAGCAAGAAAGTCTTGCAGATGCCGTGCAGGGAATAGTGAAATTTGTCAAGGAGTTTTT
TGACCTTATTGATGCCGCAGATGCCACTGGCCAGGCTGAAATTGCTCGTGAAGTTCTGAA
GAGATTAGCCGCGGCAGCTTCTGTAAAGGGAGCTCTGCATGGGCAAACCTTGCGA

Homology of Contig U35_11503 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46510.2	1354	8e-164	protein\|peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed
Brachypodium v1_2	Bradi2g45380.1	1382	5e-168
Arabidopsis v10	AT5G24710.1	1377	1e-123	Transducin/WD40 repeat-like superfamily protein \| chr5:8459148-8467920 REVERSE LENGTH=1377