barSeed - Barley Seed Development Database

Probe CUST_6259_PI390587928

Source Contig U35_11505

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6259_PI390587928	Hv_44K_v2	TACACACTGCACACCGAGTGCGATCGAGAGCTAGCTAGCTTCATCGAGCGACAATGGCGT	2	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376085	1168	7e-23	1004 - 1063	98	59 / 60	minus	ABC13422 ABC30937
MLOC	MLOC_26129.1	708	7e-23	447 - 506	98	59 / 60	minus	None
JLOC1	JLOC1_17768.1	619	4e-23	447 - 506	98	59 / 60	minus
Harvest35	U35_11505	504	3e-25	3 - 62	100	60 / 60	plus

Contig Sequence (504 bp)

>U35_11505 504 Hv_44K_v2
ACTACACACTGCACACCGAGTGCGATCGAGAGCTAGCTAGCTTCATCGAGCGACAATGGC
GTCCGACCGCCTCAGCGCGCTCAGGGCCTTCGACGACACCAAGGCCGGCGTCAAGGGCCT
CGTCGACGCCGGCGCCACAGCCATCCCGGCCATCTTCCACCACCCTCCCGACTCCTTCAC
CCCGTCCACTCTCACCACCGACGTCGCCGTCCCGGTCGTCGACCTCTCCTGCAGCCGGTC
GGACGCGGTCGGCGCGGTCAAGGCCGCGGCGGAGACGGCGGGCTTCTTCCTGCTGGCGAA
CCACGGCGTGCCGGAGGCGGCCATGTCGGGGATGCTGGCGGCCGTGCGGCGCTTCAACGA
GGAGCCGACGGAGGCCAAGGCGCCCTACTACACGCGGGACGCCGCGAGGCGCGTGCGGTA
CAGCTGCAACGCCGACCTCTTCCAGACGCTGGTCGGCAAGTGGCGCGACACCATTTACAT
GGACGACGCGGACGAGCTGGCGGC

Homology of Contig U35_11505 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g16110.1	358	4e-51
Arabidopsis v10	None