- Probe CUST_6255_PI390587928
- Source Contig U35_11510
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6255_PI390587928 | Hv_44K_v2 | ATTCTCAACCTATGTGAAGTACTGGATAAGGAAACCCATGCTAGCGCTCCTCGCTGAAAA | 464 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.253 | 0.476 | 1.430 | 2.265 | 1.119 | 1.366 |
| Raw | 3.220 | 14.272 | 39.794 | 99.587 | 17.648 | 22.779 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12452.3 | 2013 | 2e-24 | 653 - 712 | 100 | 60 / 60 | minus | ABC45698 |
| MLOC | MLOC_12452.4 | 2057 | 2e-24 | 653 - 712 | 100 | 60 / 60 | minus | ABC45698 |
| MLOC | MLOC_12452.5 | 1856 | 2e-24 | 511 - 570 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_12452.6 | 1789 | 2e-24 | 391 - 450 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_12452.2 | 2113 | 2e-24 | 715 - 774 | 100 | 60 / 60 | minus | ABC45698 |
| MLOC | MLOC_12452.1 | 2067 | 2e-24 | 734 - 793 | 100 | 60 / 60 | minus | ABC45698 |
| JLOC1 | JLOC1_8355.2 | 2127 | 8e-25 | 1339 - 1398 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8355.1 | 2086 | 8e-25 | 1282 - 1341 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC25829 | 568 | 3e-25 | 465 - 524 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11510 | 570 | 3e-25 | 465 - 524 | 100 | 60 / 60 | plus |
Contig Sequence (570 bp)
>U35_11510 570 Hv_44K_v2 CTCAAGAGAATTAGAGCATTAGAAAACATCTCCGGGGTTTGTGTAAAAGCATCCTCACGA AAAGCAAGAAAATCACACAAGTCCACTAGTAGTCAATTTATATCCGAGTGGAAAAACTAT CCAGGCCGGCGAAGGAGCATAGTTCGCGAACAGTCGGAGTTGCTCATGACTATCAAGGAA TGTGCAAACCTTGAGAAGATCAGGGAAAACATGGTGAAGGAAGGTCAGGAGGTCTGCTAT CATAAGTGGGCCAAAGCAGCTGGAGTTGATGAAGCGGTCCTGAAGAGTAGACTGCAAGCA GGCTACTGCTGCAGAGAGAGGTTATTAGTGACCACCGAGTGGCTTGTCAAGTACATTGCC AGGACATACACCGGAATGGGAACAGCTTTCGAGGATCTACTCCAGGCTGGGAAAATGGGT GTCCTTGATGGTGCTGAGAGGTTCGACAGCCAGAGAGGATGCAAATTCTCAACCTATGTG AAGTACTGGATAAGGAAACCCATGCTAGCGCTCCTCGCTGAAAATTCTGGAGTGATCCAG CTGCCCGCAAGGATGGATTGTATCATCCGG
Homology of Contig U35_11510 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g51150.3 | 441 | 2e-93 | protein|RNA polymerase sigma factor, putative, expressed |
| Brachypodium v1_2 | Bradi2g14567.1 | 546 | 4e-104 | |
| Arabidopsis v10 | None |