barSeed - Barley Seed Development Database

Probe CUST_6251_PI390587928

Source Contig U35_11516

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6251_PI390587928	Hv_44K_v2	TGACCATTAACGCATGGGAGATGATGATTCCCTTGGCGTTCTTCGCGGGCACTGGAGTGC	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364756	1930	2e-24	1071 - 1130	100	60 / 60	plus	ABC29985
MLOC	MLOC_77802.1	994	2e-24	760 - 819	100	60 / 60	minus	ABC29985
JLOC1	JLOC1_51869.1	1609	8e-25	702 - 761	100	60 / 60	plus
Harvest21	ABC25756	845	3e-25	411 - 470	100	60 / 60	plus
Harvest35	U35_11516	845	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (845 bp)

>U35_11516 845 Hv_44K_v2
CGGCACCGGAGCCTTCGCCCTCCTCTTCCCGCTGCAGCGCTTCCTGCAGTGCCAGATGAA
GAACTTCGTCAGCGCCGCCGCCTCCGGGGTGGCGCTCTGCGTCCACCTCCTCGTCAGCTG
GCTCTTCATCACCAGGCTCCGCTTCGGCCTCGTCGGCATCGCCCTCACCCTCAACTTCTC
CTGGTGGGCCACCTTCGCCATGCTCTTCGCCTACGTCGCCTGCGGCGGCTGCCCGGACAC
CTGGCACGGCTTCTCCGTCGAGGCGTTCGCCGACATTTGGGAGTTCGTCAAGCTCTCCGC
CGCGTCGGGCGTCATGCTATGCTTGGAGAACTGGTACTACAGGGTGCTCATCTTGCTGAC
AGGGAACCTCAAGGACGCGGCTATTGCGGTGGATGCGCTCTCCATCTGCATGACCATTAA
CGCATGGGAGATGATGATTCCCTTGGCGTTCTTCGCGGGCACTGGAGTGCGGGTGGCGAA
CGAGCTGGGCGCCGGGAACGGGAAGGGGGCCCGGTTCGCGACGATCGTGTCGTCCTTGAC
GTCGCTGGTGATCGGGCTCTTCTTCTGGGTGCTGATCATGGGCCTCCACGACAAGCTGGC
GCTCATCTTCACGTCCAGCGCCGTCGTGCTGGACGCCGTCAACAACCTCGCCATCCTGCT
GGCCTTCACCATCCTGCTCAACAGCATCCAGCCCGTGCTCTCAGGTGTGGCTGTTGGATC
CGGCTGGCAATCCGCGGTGGCCTACGTCAACATCGGCAGCTACTACTTCATCGGCGTCCC
CATGGGTGTCCTCCTCGGGTGGCTCTTCAACCTTGGCGTCCTGNGGATCTGGGCGGGAAT
GATCG

Homology of Contig U35_11516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08900.1	490	8e-163	protein\|MATE efflux family protein, putative, expressed
Brachypodium v1_2	Bradi1g72007.1	507	0.0
Arabidopsis v10	AT5G65380.1	486	1e-142	MATE efflux family protein \| chr5:26123241-26126352 REVERSE LENGTH=486