barSeed - Barley Seed Development Database

Probe CUST_6233_PI390587928

Source Contig U35_23505

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6233_PI390587928	Hv_44K_v2	GGGTGCCTTGTTTAGGTTCAAAACCTGTACATGTTACTTGTAAATAACAATCATATCTGT	659	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251786.1	1861	2e-24	1773 - 1832	100	60 / 60	plus	ABC24531
MLOC	MLOC_5100.5	1146	2e-24	1080 - 1139	100	60 / 60	plus	ABC24531
MLOC	MLOC_5100.3	1761	2e-24	1695 - 1754	100	60 / 60	plus	ABC24531
MLOC	MLOC_5100.2	1636	2e-24	1557 - 1616	100	60 / 60	plus	ABC24531
JLOC1	JLOC1_3252.1	1796	8e-25	1705 - 1764	100	60 / 60	plus
Harvest21	ABC24531	477	3e-25	20 - 79	100	60 / 60	minus	ABC24531
Harvest35	U35_23505	740	3e-25	660 - 719	100	60 / 60	plus

Contig Sequence (740 bp)

>U35_23505 740 Hv_44K_v2
CTCTTGTTGGTTCTCTTGAAATGCCGAAGGCTGATGTATGGGTTGTCATTGCAATCATGT
CTGGGGTGATTGGCTATTGTGCTAAGATCTACTTCACGTTTCAGCAAAATATGACACTAT
ATCAGAATTTGATTACGAAATCAATGTATGACAAACAACTTGATAGTGGGAAAGGAACAC
TTCTTCACTTATGTGATGATGTGATACAGCAAGAAGTTAAGGAGGTCATAATTTCTTACT
ATATTTTAATGGAGCAAGGGAAGGCAACTATACAAGATCTTGATTTGCACTGTGAAGAGC
TAATTAAAGAGGAGTTTGGCGCTGAGTGCAATTTTGATGTTCACGATGCGGTAAAGAAGT
TAGAGAAGCTTGGCATCGTCCATCGGGATTCGATTGGAAGGATATTATCTGCTCCGTTGA
AGCGTGCCAACGAAATCATAGGCACCACGACTGAAGAAATGGTGATGCGAGCACAACAGA
ACCCTGCTTCATAAGTGTCACCTCAAAGGAAATGTATTTCTCTATATAAAAGCCCAGGCC
AGAACTCAGAAGGCATCTGCTCATCCTCAAGGGACACGCCTAGCTTTCAATGTACCATCT
GTACTCAATATCTTAGATTATATTTTCCGACATTGGGGAGTTCTAACGAGTGTAACTAAG
GGTGCCTTGTTTAGGTTCAAAACCTGTACATGTTACTTGTAAATAACAATCATATCTGTA
ATGAAACAATANGTAAAAGC

Homology of Contig U35_23505 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g29550.1	511	4e-96	protein\|expressed protein
Brachypodium v1_2	Bradi4g07450.1	516	2e-105
Arabidopsis v10	AT3G19340.1	487	9e-82	Protein of unknown function (DUF3754) \| chr3:6701387-6704071 REVERSE LENGTH=487