barSeed - Barley Seed Development Database

Probe CUST_6225_PI390587928

Source Contig U35_11536

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6225_PI390587928	Hv_44K_v2	GGTCCTTGTTGTGGTTGTACTTTGTAGGTAGTTATATTGTAATAGGTAGTAGTGACTATA	454	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74484.9	2727	2e-24	86 - 145	100	60 / 60	minus	ABC23027 ABC25086 ABC47063
MLOC	MLOC_74484.1	2036	2e-24	93 - 152	100	60 / 60	minus	ABC23027 ABC25086 ABC47063
MLOC	MLOC_74484.6	2611	2e-24	91 - 150	100	60 / 60	minus	ABC23027 ABC25086 ABC47063
MLOC	MLOC_74484.2	1431	2e-24	93 - 152	100	60 / 60	minus	ABC25086 ABC47063
MLOC	MLOC_74484.10	1373	2e-24	85 - 144	100	60 / 60	minus	ABC25086 ABC47063
MLOC	MLOC_74484.7	1087	2e-24	86 - 145	100	60 / 60	minus	ABC25086 ABC47063
MLOC	MLOC_74484.3	1555	2e-24	93 - 152	100	60 / 60	minus	ABC25086 ABC47063
MLOC	MLOC_74484.4	2544	2e-24	93 - 152	100	60 / 60	minus	ABC23027 ABC25086 ABC47063
MLOC	MLOC_74484.5	1512	2e-24	93 - 152	100	60 / 60	minus	ABC25086 ABC47063
MLOC	MLOC_74484.8	1046	2e-24	86 - 145	100	60 / 60	minus	ABC25086 ABC47063
JLOC1	JLOC1_49635.3	1289	8e-25	1136 - 1195	100	60 / 60	plus
JLOC1	JLOC1_49635.2	1297	8e-25	1144 - 1203	100	60 / 60	plus
JLOC1	JLOC1_49635.1	2404	8e-25	2251 - 2310	100	60 / 60	plus
Harvest21	ABC47063	569	3e-25	152 - 211	100	60 / 60	minus	ABC47063
Harvest21	ABC25086	656	3e-25	143 - 202	100	60 / 60	minus	ABC25086
Harvest35	U35_46663	569	3e-25	152 - 211	100	60 / 60	minus
Harvest35	U35_11536	656	3e-25	455 - 514	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_11536 656 Hv_44K_v2
ACAGGGACTCTCAGACTGTACCCTTCGATCCCGTTGGATAACAAGGAGTGATTTTCGGAC
GACGTGCTGCCCAACGGATTCAGCGTCGGCAAGGGCAACATGGTGTTCTACGCCCCCTAT
GCCATGGGCTGGATGGAGCGCGTGTGGGGCGATGACGTCCAGGTCTTCCGGCCCGAGCGG
TGGCTCGACGAACACAGCGTGTTCCAGCCAGAAAGCCCTTTCAAGTTCACAGCTTTCGAG
GTAACTGGCTGCATGGGAATGTTCTCATTACTGCCGCTGAAACTTCCTAAATCTGGACAC
CTGCTTCTTGGTGTGCATGCAGGCTAGTCCGAGGATCTGCGTGGGAAAGGAGTTCACGTA
TAGGCAGATGAAGATCTTCGCGTTAGGCTTTCTGCTTTCAGTTGCAGCTAGACTCAATAA
TGGATGAGGAACCTACTGATGGATCTTTCTCAAGGGTCCTTGTTGTGGTTGTACTTTGTA
GGTAGTTATATTGTAATAGGTAGTAGTGACTATAAGAGGTTAATTTTGGCTATCATTTCA
AGAATTTATTTGTGTAACATTTGAAATGTTTGTCTTTTGTGTACTGTGAAAATGTGAGAA
ATAGAAAGCTGTAAAGTTGGACCAAATTAAGAAAAAGGCCAAGTCGCAAAACAAAA

Homology of Contig U35_11536 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None