barSeed - Barley Seed Development Database

Probe CUST_6224_PI390587928

Source Contig U35_11537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6224_PI390587928	Hv_44K_v2	GGCAAGAGAAGGTTGCTGGTCTACGAGTACATCTGCAACAGATCACTGGACACTCATCTG	509	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356546	3033	2e-24	1990 - 2049	100	60 / 60	plus	ABC20776
MLOC	MLOC_74314.3	1956	2e-24	160 - 219	100	60 / 60	minus	None
MLOC	MLOC_74314.2	1754	2e-24	160 - 219	100	60 / 60	minus	None
MLOC	MLOC_74314.1	1707	2e-24	160 - 219	100	60 / 60	minus	None
JLOC1	JLOC1_49520.1	1991	8e-25	1724 - 1783	100	60 / 60	plus
Harvest21	ABC22149	568	1e-24	510 - 568	100	59 / 59	plus
Harvest35	U35_11537	569	3e-25	510 - 569	100	60 / 60	plus

Contig Sequence (569 bp)

>U35_11537 569 Hv_44K_v2
CATGGATGGCCGACATCCTGCAGAGGCCCGGTGCATCCCCCAGACCAACACCAACCCGTC
GAAGAACCCCGACGGCCGACGCGCTGCTGGAGAAGATCGCCAAGCTGGACCTACTGACCG
AGATCAGTGCAGTGAGGAGCAGGTCAGACCTCAACTTCAGAGGAAATGTAAGAGACGTCG
TATCCCTCTCCCGGACCCCTGCGCCGGGACCGCCGCCGCTCTGCTCGGTGTGCCAACACA
AGACGCCGGTGTTCGGGAAGCCGCCGCGGTGGTTCAGCTACGCCGAGCTGGAGCATGCCA
CCGGTGGCTTCTCCAGAGCAAATTTCTTGGCTGAAGGTGGGTTTGGGTCTGTTCATAGAG
GGGTGCTGCCTGACGGCCAGGCCATTGCTGTCAAGCAGCACAGGCTTGCCAGTAGCTCGC
AGGGCGACGTCGAGTTCTGCTCCGAGGTGGAGGTGCTCAGCTGCGCGCAGCACCGGAACG
TCGTCATGCTCATCGGGTTCTGCGTCGAGGGCAAGAGAAGGTTGCTGGTCTACGAGTACA
TCTGCAACAGATCACTGGACACTCATCTG

Homology of Contig U35_11537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g51190.3	489	1e-102	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi2g14530.1	816	7e-106
Arabidopsis v10	AT3G13690.1	753	5e-82	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain \| chr3:4486920-4490011 FORWARD LENGTH=753