- Probe CUST_6219_PI390587928
- Source Contig U35_23512
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6219_PI390587928 | Hv_44K_v2 | AGAAGTGATATTGGTGCCCTTGCTCAGAGATACACAGTTATTGATCGCGAGGAGGAATGT | 658 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.055 | 1.265 | 1.657 | 1.499 | 0.632 | 0.607 |
| Raw | 223.694 | 416.284 | 476.334 | 686.082 | 100.282 | 104.501 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371182 | 3845 | 2e-24 | 3061 - 3120 | 100 | 60 / 60 | plus | ABC13943 ABC13944 ABC14735 ABC48262 |
| MLOC | MLOC_55259.1 | 3546 | 2e-24 | 780 - 839 | 100 | 60 / 60 | minus | ABC13943 ABC13944 ABC14735 ABC48262 |
| MLOC | MLOC_55259.2 | 3586 | 2e-24 | 758 - 817 | 100 | 60 / 60 | minus | ABC13943 ABC13944 ABC14735 ABC48262 |
| JLOC1 | JLOC1_35632.7 | 3619 | 8e-25 | 2710 - 2769 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35632.6 | 3610 | 8e-25 | 2701 - 2760 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35632.5 | 3610 | 8e-25 | 2701 - 2760 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35632.4 | 3613 | 8e-25 | 2704 - 2763 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35632.3 | 3593 | 8e-25 | 2684 - 2743 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35632.2 | 3691 | 8e-25 | 2782 - 2841 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35632.1 | 3564 | 8e-25 | 2655 - 2714 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14734 | 788 | 3e-25 | 659 - 718 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_23512 | 788 | 3e-25 | 659 - 718 | 100 | 60 / 60 | plus |
Contig Sequence (788 bp)
>U35_23512 788 Hv_44K_v2 TATACCAGCAATGATGCGTTATGTGAGCGAACCACATGCCAAGAACGAAACACATGAGGT CATTAAGTACTTGGAATTTTGTGTCAAAGATTTGAACAATGAGGATCCTGGAGTACACAA TTTGTTGCTCTCATTGTATTCCAAGAAGGAGGATGAGTCCCAGCTTTTACAATTTCTCGA CACCAAGTTTGGTAGTGGACAAGCAAATGGACCTGAGTTCTTTTACGAACCCCAATATGC TCTGCGCCTATGTCTCCAAGCGAAGAGGATGCGTGCTTGTGTTCGTATTTACAGCATGAT GTCCATGCATGAGGAAGCTGTGGCACTTGCTTTGAGGGTGGACTTGGAACTTGCAAAGGC AGAAGCAGATAAAGTTGAAGATGATGAAGAGCTTAGGAAGAAGCTGTGGCTTAAAGTTGC AAAGCATGTCATCGAGCAGGAGAAAGGAGTCAAGAGGGAGAACATAAAGAAAGCTATAGA GTTTCTATCAGAAACTAACAACTTGCTGAAGATTGAGGATATCTTGCCATTTTTCCCGGA CTTCGTATTGATTGATGACTTTAAAGAAGAAATCTGCAAATCTCTCAAGGACTATAACAG CCAGATTGAGCAACTGAAGGCAGAGATGGATGATGCTACGCGTGGAGCAGACAACATCAG AAGTGATATTGGTGCCCTTGCTCAGAGATACACAGTTATTGATCGCGAGGAGGAATGTGG GGTATGCCGGCGCAAAATATTGACCGTGGGAGGATTGCACCAGGTAGGCAGAAGTTATAC ATCTGTTG
Homology of Contig U35_23512 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g08060.1 | 1001 | 1e-155 | protein|vacuolar protein sorting-associated protein 18, putative, expressed |
| Brachypodium v1_2 | Bradi3g15520.1 | 992 | 9e-161 | |
| Arabidopsis v10 | AT1G12470.1 | 988 | 5e-122 | zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988 |