- Probe CUST_6208_PI390587928
- Source Contig U35_11544
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6208_PI390587928 | Hv_44K_v2 | AGTTCGGGTTTGGTGTGACAAATGCGTTGGATGTATGGTTCATTGATGCCAATTTGCACC | 593 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.077 | 0.987 | 1.340 | 1.439 | 0.503 | 0.463 |
| Raw | 65.598 | 91.951 | 110.340 | 184.278 | 23.475 | 22.800 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376605 | 2046 | 2e-24 | 1118 - 1177 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68571.2 | 3597 | 2e-24 | 2912 - 2971 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_68571.3 | 3440 | 2e-24 | 2755 - 2814 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_68571.5 | 2932 | 2e-24 | 2247 - 2306 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_68571.1 | 3765 | 2e-24 | 3080 - 3139 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_68571.4 | 3879 | 2e-24 | 3194 - 3253 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_45378.1 | 3119 | 8e-25 | 627 - 686 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24777 | 653 | 3e-25 | 594 - 653 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11544 | 653 | 3e-25 | 594 - 653 | 100 | 60 / 60 | plus |
Contig Sequence (653 bp)
>U35_11544 653 Hv_44K_v2 GGTCTCCCGCGACGTCACGAGGTACGCGGCGCTTCTCTCCGAGCCTGGCGAGGTCGCGGT GTACCTTGGCAACATCGTCGATAGCACATACACCGGTGTCTACCACGCCAATCTCACGCT CCATCTTTACTTCCACCCCACAACGCCGTCACCGCCGCCGCCGCCGCACTCCGATTTGGT CCTGCCCATCTCGAGAAGCCTACCTCTGAATGACGGGCAGTGGTTCGCCATCCAGAATTC CACCGATGCGCAGTCAAAGAAGCTTGCCATTCCGTCGAACACCTACAGGGCGGTCCTTGA GGTGTTTGTTTCGTTCCACTCCAACGATGAGGACTGGTTCACCCACCCTCCCAACGAGTA CATTGAGGCCAACAAGTTGTCTAGCAACATTGGCAATGGCGCCTTCCGGGAGGTCATTGT TAAGGTCAATGAAGACATCGTCGGTGCTGTTTGGCCGTTCACTGTCATCTACACCGGCGG TGTCAACCCGCTTTTCTGGCGGCCTATCACTGGCATTGGCTCATTCAATCTCCCAACATA TGACATTGACATCACGCCATTCTTGGGGAAGCTCCTGGATGGCAAGGAGCATGAGTTCGG GTTTGGTGTGACAAATGCGTTGGATGTATGGTTCATTGATGCCAATTTGCACC
Homology of Contig U35_11544 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g10930.1 | 624 | 2e-130 | protein|peptide-N4-asparagine amidase A, putative, expressed |
| Brachypodium v1_2 | Bradi2g06570.1 | 592 | 4e-126 | |
| Arabidopsis v10 | AT3G14920.1 | 609 | 5e-87 | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr3:5018275-5020104 FORWARD LENGTH=609 |