barSeed - Barley Seed Development Database

Probe CUST_6207_PI390587928

Source Contig U35_11545

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6207_PI390587928	Hv_44K_v2	ATGTGGTAGGAACTGAACGACATGAATCCCGCAGAATTGACAATCAACTTCGTGGTCGAA	861	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355166	4504	2e-24	3385 - 3444	100	60 / 60	plus	ABC14078
Harvest21	ABC21802	932	3e-25	862 - 921	100	60 / 60	plus
Harvest35	U35_11545	932	3e-25	862 - 921	100	60 / 60	plus

Contig Sequence (932 bp)

>U35_11545 932 Hv_44K_v2
GAGAAGGTGTGCAAATACAGAATGAAACCATAACCCTCGCATCTATAAGTTACCAGAACT
TCTTTCTTCAGTTTCCAAAACTCTGTGGCATGACTGGAACTGCAGCTACAGAAAAACAGG
AGTTCGAGAGCATATACAAACTAAAAGTTACAGTTGTTCCAACGAATAAGTCTATGATAC
GGAAGGACGATTCAGATGTTGTTTTCAGAACGACAAGTGGAAAATGGCGTGCTGCTGTTG
TGGAGATATCAAGAATGAATAAAGCTTCCCGTCCTGTGCTTGTTGGTACAACTAGTGTTG
AGCAAAGTGAAACTTTGTCTGAACAACTACGTGAAGCGGGGATTCCTCACGAGGTCCTTA
ATGCTAAACCAGAGAATGTGGAGAGGGAGGCAGAGATTGTAGCTCAGAGTGGACGCCTTG
GTGCAGTGACAATTGCCACCAACATGGCAGGACGTGGCACTGATATTATCCTTGGAGGCA
ATGCAGAATTCATGGCCAGGCTGAAGTTGCGTGAGGTGCTTATGCCAAGAATTGTCAATC
CAGTTGATGGTGTCATTGTGTCCAAAAAGCAGCTTCCACCAAGAAAAACATGGAAGACAA
ATGAAAGCTTGTTCCCTTGTGAACTTTCAGAAGACACACTATCATGTGTCAAGGATGCAG
TTGACGTGGCTGTCAAAGAATGGGGAGAAAAGTCATTACCTGAGCTAGAAGCTGAAGAGC
GTCTCTCCTACTCATGTGAAAAGGGACCGACACGTGATGAAGTAATTGCAACTCTGAGAA
CCGCATTCATGAAGATAGTAGATGAATTTAAGATTTACACAGAGGAGGAAAAGAAGAAGG
TCATTGCGACAGGTGGGCTTCATGTGGTAGGAACTGAACGACATGAATCCCGCAGAATTG
ACAATCAACTTCGTGGTCGAAGTGGCAGGCAA

Homology of Contig U35_11545 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g21820.1	1016	0.0	protein\|preprotein translocase subunit secA, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g12067.1	1000	0.0
Arabidopsis v10	AT4G01800.2	1042	3e-158	\| Symbols: AGY1, SECA1 \| Albino or Glassy Yellow 1 \| chr4:770926-776134 REVERSE LENGTH=1042