barSeed - Barley Seed Development Database

Probe CUST_6203_PI390587928

Source Contig U35_11549

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6203_PI390587928	Hv_44K_v2	GAACTGCATGTACTACTTGTAAGTGACTTTGTTCCGTTGTTTTGGAACGGTATCTTGGTT	608	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.521	1.355	1.047	1.042	0.495	0.329
Raw	1311.783	1866.244	1255.803	1926.182	326.435	238.465

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74909.1	575	7e-23	507 - 567	98	60 / 61	plus	ABC24791
JLOC1	JLOC1_49937.1	722	4e-23	512 - 572	98	60 / 61	plus
Harvest21	ABC24791	668	3e-25	1 - 60	100	60 / 60	minus	ABC24791
Harvest35	U35_11549	668	3e-25	609 - 668	100	60 / 60	plus

Contig Sequence (668 bp)

>U35_11549 668 Hv_44K_v2
GTGGCGCCGCTCTTCCCCGGCTGCGACTATGAGCACTGGCTCATCGTCATGGACAAGCCC
GGCGGCGAGGGCGCCACCAAGCAGCAGATGATCGACTGCTACATCCAGACCCTCGCCAAG
GTCGTGGGGAGCGAGGAGGAGGCGAAGAAGAGGATGTACAACGTGTCCTGTGAGCGCTAC
TTTGGGTTTGGGTGCGAGATTGACGAGGAAACCTCCAACAAGCTGGAAGGCCTCCCGGGT
GTTCTTTTTGTGCTTCCAGATTCCTATGTTGATGCTGAGAACAAGGACTATGGTGCCGAG
TTATTTGTGAACGGAGAAATCGTCCAGCGATCACCTGAAAGGCAGAGAAGGGTGGAGCCG
GTGCCTCAGAGAGCTCAAGATAGACCGCGTTACAGCGACCGGACTCGCTATGTGAAGCGG
AGGGAGAACCAGGCCTACCAACGGTGACATGCCCCTGTCGGTCTACGGGGTCTACCGCAA
GCACCCCATTGCTATCGCTCTTGCCCTAGATATAGCAACTGCTCCACGCCCGAAATGCCC
CTCGGCGTCTTTGCTGCATTGTAGCCTCCATGCCTGGGCGTTTATTTTCTTCATGAACCG
TAGGTTAAGAACTGCATGTACTACTTGTAAGTGACTTTGTTCCGTTGTTTTGGAACGGTA
TCTTGGTT

Homology of Contig U35_11549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51280.1	224	2e-104	protein\|DAG protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi5g20660.1	216	7e-105
Arabidopsis v10	AT2G33430.1	219	6e-96	\| Symbols: DAL1, DAL \| differentiation and greening-like 1 \| chr2:14162732-14164729 FORWARD LENGTH=219