barSeed - Barley Seed Development Database

Probe CUST_6202_PI390587928

Source Contig U35_23520

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6202_PI390587928	Hv_44K_v2	TCTCAAAGCTTTAGGGCTTTTCTGTAAAGATATGGCCATCCGTCATGGACTGCATGTAGA	773	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.397	1.702	1.020	0.892	0.378	0.434
Raw	771.921	1497.810	768.168	1090.230	155.624	196.833

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374248	1996	7e-23	1908 - 1968	98	60 / 61	plus	ABC18768
MLOC	MLOC_6581.2	1654	3e-21	1534 - 1594	97	59 / 61	plus	ABC18768
MLOC	MLOC_6581.1	1911	3e-21	1784 - 1844	97	59 / 61	plus	ABC18768
JLOC1	JLOC1_4297.2	1195	2e-21	1071 - 1131	97	59 / 61	plus
JLOC1	JLOC1_4297.1	1798	2e-21	1674 - 1734	97	59 / 61	plus
Harvest21	ABC18768	844	3e-25	774 - 833	100	60 / 60	plus	ABC18768
Harvest35	U35_23520	844	3e-25	774 - 833	100	60 / 60	plus

Contig Sequence (844 bp)

>U35_23520 844 Hv_44K_v2
CCTTTGGCTCCTAGTATGGAATTCCACGTTGACAACAAAATATCAGGAGATGCTAAGGCC
ACTACCTGTTCCAATGGAAGGCCTTCAGTTATGCTCATGAATATTGCAGATGAAACAAAG
AAGATGCGGCTTACAGAGGTAGTTGAAATGCTTGGGGGAGTTGTTACCTGTGAAGGAAGT
TCATGCACACATGTCGTTACTGGAAAAGCTCGAAGGACTATGAACTTTTGTACTGCTTTG
AGCTCTGGGGCTTGGATAGTTTCTCCAAATTGGCTAAAACAGAGCTTTAAACAAGGGAAA
TTTGTAGGTGAAGCAGAACATGTTCTGGATGATGAAGAATATAAGATGAAGTACAAGTCT
GAAATGAGAGATGCGGTTATGAGGGCTAAAGAGAGGCCTTGCTTATTATTTTCTGGCTAC
ACTTTCTGTTTGACCAAGCACATCGAACCCTCTCCTGGTGTCCTCTCTCCAGTTATCAAA
TCCTCTGGTGGCAAGATCATCAATAAGCTGGATGACATAGATGAGCCCTCAAAGACAATC
TTCTTGGCTTGTGAAGAAGGCATGGAGCTTGCAATGGATGCAGCAAAAAGAGGCATAAAG
ACATTCAGCAGTGAGTGGCTCATGACCTGTGTCATGAGGCAAGAGGTTGATCTTGAGGCG
CCCCCGTTTGCAGAATCTCTCTGATGTGCTCCAAGTTAATTTATAGTCGAGGGGCTGAAC
TTATACTTACTTTTGCGAAGTTATTGCCTTCGTTGGCTATTGTAAATCCGGTGTCTCAAA
GCTTTAGGGCTTTTCTGTAAAGATATGGCCATCCGTCATGGACTGCATGTAGANAATTAT
CAAA

Homology of Contig U35_23520 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g31254.1	613	9e-120	protein\|acetyltransferase, GNAT family, putative, expressed
Brachypodium v1_2	Bradi2g27097.1	588	4e-133
Arabidopsis v10	AT2G41450.1	612	3e-67	N-acetyltransferases;N-acetyltransferases \| chr2:17278190-17281637 FORWARD LENGTH=612