barSeed - Barley Seed Development Database

Probe CUST_6200_PI390587928

Source Contig U35_23522

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6200_PI390587928	Hv_44K_v2	TCTTAGAACGCTGTGTATCAACACTGAGTTCTCTTATAACACTATGTCAGCACTAAAAAA	806	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.294	1.048	1.291	0.936	0.230	0.299
Raw	178.778	219.469	245.949	282.539	24.441	34.406

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24585.1	1000	2e-23	24 - 81	100	58 / 58	minus	ABC21168
Harvest21	ABC21168	877	3e-25	807 - 866	100	60 / 60	plus	ABC21168
Harvest35	U35_23522	877	3e-25	807 - 866	100	60 / 60	plus
Harvest35	U35_40811	731	4e-24	19 - 76	100	58 / 58	minus

Contig Sequence (877 bp)

>U35_23522 877 Hv_44K_v2
TATTCATGAGCTGTTTTCTTACTTCGAGTAAGCTTGAAACTGATGGTCTCAGTTGGTTTG
TGTATTAACTTTGTTCAGAACCTGAATATATAAAAACTGAGTAGAGGGTCGCCTTTTGTG
CAGGAATTTGCAGCATGTCTGACCCATTTTTGCAGCAGTGTTAAGCCATTGATGCGTGCT
TTAATTGTCAACTTCATTTTTGGAAGTGCATACTCCATTGAGGAATGTAGCATTTACAAT
GATATAAATTGGAAAGCAAATTCCATGATTCTGTTAAGTGTCAACTTATCAGCATTTCCA
TCTCATTTTTAAGCTCCATTGTTCTTGTGGAAAGGATACACACTTCTCCCCGCATCATGT
ATCATGTTTGTCAAGGTTATATTGTTCCAGTTTGCTTTGTTTGCACATATGGAGGTACTC
AACACAGTACACAACTCTGTAGCATGCAGATGCTTTCTTATTTGGCCTCCTTGGTTAGTG
CTTGATGATTCATTTGACAGCAGACCCCACCCACCAGGAAGCAACCACAAGCGGCTCGGC
TACTCCGGCATCATGGGCACCACTTTCCCCCGAAGACCACATGCCCGGCGACGAATCTGG
CAAGCATGGGTGCGCACCTCCAGCAACTAGAATTGAGTGCGTAGGAAACTTATGGCTTAT
GGCTCTCCTTGATGACCATCACCTCATAACCACAACCATCTACATGATACCTACCGGCTA
TATACTATGCTCATTGTAAATAATCTATTATCAATTTACAACAGTATATAGCAACACTGT
ATTTCTACTTATGCTCATTGTAAACTTCTTAGAACGCTGTGTATCAACACTGAGTTCTCT
TATAACACTATGTCAGCACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_23522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None