barSeed - Barley Seed Development Database

Probe CUST_619_PI390587928

Source Contig U35_38032

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_619_PI390587928	Hv_44K_v2	ATTTAGATAACCAAAAGAGCAGCAAACATGGCGTCGTCCCAGATCGAAGTTGTCGATCGA	269	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358522	790	2e-24	471 - 530	100	60 / 60	minus	ABC01762 ABC01765 ABC33810
MLOC	MLOC_35254.2	817	2e-24	215 - 274	100	60 / 60	plus	ABC01762 ABC01765 ABC33810
MLOC	MLOC_35254.3	1032	2e-24	183 - 242	100	60 / 60	plus	ABC01762 ABC01765 ABC33810
MLOC	MLOC_35254.1	918	2e-24	256 - 315	100	60 / 60	plus	ABC01762 ABC01765 ABC33810
JLOC1	JLOC1_22779.1	1265	8e-25	784 - 843	100	60 / 60	minus
Harvest21	ABC37908	598	3e-25	426 - 485	100	60 / 60	minus
Harvest21	ABC33810	612	3e-25	270 - 329	100	60 / 60	plus	ABC33810
Harvest21	ABC30695	721	3e-25	594 - 653	100	60 / 60	minus
Harvest21	ABC01766	763	3e-25	459 - 518	100	60 / 60	minus
Harvest21	ABC01765	838	3e-25	271 - 330	100	60 / 60	plus	ABC01765
Harvest21	ABC01762	796	3e-25	462 - 521	100	60 / 60	minus	ABC01762
Harvest35	U35_38032	612	3e-25	270 - 329	100	60 / 60	plus
Harvest35	U35_30677	721	3e-25	594 - 653	100	60 / 60	minus
Harvest35	U35_14653	693	3e-25	364 - 423	100	60 / 60	minus
Harvest35	U35_14650	823	3e-25	462 - 521	100	60 / 60	minus

Contig Sequence (612 bp)

>U35_38032 612 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAAGAACTTGCTCTGAGGCTGTTATTATCTTACCATAGTCGG
TTAAACATTGAGAAGACCACACCACCCACACGAGAGAATTTACACATGGAGCGCACACAA
AGTACACACATACACCCATCACTCGCTAGCATGCGGCGAGCAAAGAGCAAACTGAGGTAA
CAAAAGAAAGTTACAAGCACTAGTATAGTAGTACTACTAAGCTTAGGAGAAACTACATGC
AGCCTCGGACAGCAACGTACGTACGCAGGATTTAGATAACCAAAAGAGCAGCAAACATGG
CGTCGTCCCAGATCGAAGTTGTCGATCGAGCACCCCCGTCTTCCTCTTCTTTAGCGGTGG
TTGCTCCTCCTCCTCATCGCACAGGAGGCGGCGGTGCCGGGGGCGGAGGCGAGGATCTGC
CGGCGGCGCAACGCGGGGTTCAAGGGGCCGTGCGTGTCGAACAAGAACTGCGCGCAGGTC
TGCATGCAAGAGGGATGGGGCGGCGGCAACTGCGACGGGCCCCTGCGCCGGTGCAAGTGC
ATGAGGCGGTGCTGATCGTAGCTGCAATGGCAGCTGCTCCTCACCGTACGTCAGCTAGCC
AGCCCATGGAAC

Homology of Contig U35_38032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None