barSeed - Barley Seed Development Database

Probe CUST_6189_PI390587928

Source Contig U35_35508

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6189_PI390587928	Hv_44K_v2	TATTGAAGACCATGAATCTAGGCCCAGGAAGCAATACCAGAATCCACCAGGTTCTGATGT	403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362485	3911	2e-24	2320 - 2379	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_7022.3	4759	2e-24	3057 - 3116	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_7022.4	3385	2e-24	1947 - 2006	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_7022.1	3733	2e-24	2187 - 2246	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_7022.2	3692	2e-24	2225 - 2284	100	60 / 60	plus	ABC12672 ABC22302
JLOC1	JLOC1_4623.1	4003	8e-25	2201 - 2260	100	60 / 60	plus
Harvest35	U35_35508	517	3e-25	404 - 463	100	60 / 60	plus

Contig Sequence (517 bp)

>U35_35508 517 Hv_44K_v2
GGGTCGATCACTATGACTATGATGTTCAAGAAGAGAACTTGTTTGATCGTTTCTCTTCAA
AACATACTGAAGAGTTACCAGCTATCCAAGACCACAAGGGATTCTCAAGTGCAGATTGGA
GTCAGCAGCATAGAAGTGAATCTCCAGTTGATCGTAGCACTTCAACTCTCTTCTCAAGAA
CAGAAACACAGCCGCCTTATGATTTAGGAGCAAACAAAGAGGATATTCCCTTGAATGATA
CCAAACCACCTACTTTTGATTCAGATGGTGTTAGTTCTGACGAGGAAACAAGTACAGACA
TGCAGATATTGTCTTTAAGGACCAATTCAAGAGGATCTGATTACTCTGAGAACAGAATGT
TCAATAAGAATTCTGGAAAATTTGTCCCTGATGTTAATGATAGTATTGAAGACCATGAAT
CTAGGCCCAGGAAGCAATACCAGAATCCACCAGGTTCTGATGTATTCCGCAAGGGGCAAA
ACAGTGACGGTTCACCANANAAAAAAAAAAAAAAAAA

Homology of Contig U35_35508 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51010.2	957	4e-52	protein\|DUF292 domain containing protein, expressed
Brachypodium v1_2	Bradi2g47747.1	1130	1e-78
Arabidopsis v10	None