barSeed - Barley Seed Development Database

Probe CUST_6184_PI390587928

Source Contig U35_11554

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6184_PI390587928	Hv_44K_v2	TTCTCTTCTTCGCATAAATTCTGCAAGCAACTCATCACAGAATGTGGAGCTCCTGCTGCA	415	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52077.4	1453	2e-24	1045 - 1104	100	60 / 60	minus	ABC43075
MLOC	MLOC_52077.3	3626	2e-24	1094 - 1153	100	60 / 60	minus	ABC43075
MLOC	MLOC_52077.1	3769	2e-24	1094 - 1153	100	60 / 60	minus	ABC43075
MLOC	MLOC_52077.2	3975	2e-24	1094 - 1153	100	60 / 60	minus	ABC43075
JLOC1	JLOC1_33321.1	3731	8e-25	2555 - 2614	100	60 / 60	plus
Harvest21	ABC22489	904	3e-25	416 - 475	100	60 / 60	plus
Harvest35	U35_11554	904	3e-25	416 - 475	100	60 / 60	plus

Contig Sequence (904 bp)

>U35_11554 904 Hv_44K_v2
TTTCCGTCCTCCAGCGCCAGTGTGAGCGCCTCGCCAGCGAGCTCGCCCGCAGCATCGCCG
ATCAAGGAGTTATCCGCACCCCTGAGGCGAGGACAAATATGATGAAGCTGTCTCAGAGGA
TGATCACCGCCTTCTGTGCTAACATAAGTGCATCTGGGAGCCAGTCTTGGACGGCACTAT
CTGATTCTACAGAGGACACAGTCAGGATTACAACAAGGAAGAATACTGAGCCGGGGCAGC
CCAGCGGTGTCATCCTCACTGCAGTCTCCACAAGCTGGCTTCCTTTCAGCCATCAACAGG
TGTTTGAGCTTCTTGCAGACGAGCAACAGCGCTGTCAGCTTGAGATTATGTCAAACGGGG
GCTCACTTCATGAGGTGGCACATATTGCAAATGGATCACACCCAAGGAATTGCATTTCTC
TTCTTCGCATAAATTCTGCAAGCAACTCATCACAGAATGTGGAGCTCCTGCTGCAGGAGA
GCAGCATCCACCCTGATGGTGGAAGCCTGGTGGTGTTTGCAACCGTGGATGTGGATGCCA
TCCAGGTGACAATGAGCGGGGAGGATCCTTCCTACATTCCTCTACTTCCCATGGGTTTTG
CCATCTTCCCAGCCACCAGCCCTTCACCTGGAGCCACCAGCTCAGACACCACTGGCAACG
GCGAAAGTAGTCCTGGCAATGCAGATGAGCCCGCCACTGGCTGCCTCCTCACCGTCGGCA
TGCAGGTGCTCGCCAGCGCCGTGCCTTCAGCCAAGCTCAACCTCTCAAGCGTCACCGCGA
TCAACAGCCACATCTGCAACACCATCCACCAGATTACAACAGCACTCAAGGGTGCCGGAG
GTAGCCGGACTGAGCCGGCGCCTGCATGTTCCGACCAGTAGCAAGAGATGATGGGTGGGA
GTGG

Homology of Contig U35_11554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42490.1	883	1e-154	protein\|homeobox and START domains containing protein, putative, expressed
Brachypodium v1_2	Bradi3g34410.1	889	2e-170
Arabidopsis v10	AT5G46880.1	826	3e-100	\| Symbols: HB-7, HDG5 \| homeobox-7 \| chr5:19031540-19035388 FORWARD LENGTH=826