barSeed - Barley Seed Development Database

Probe CUST_6181_PI390587928

Source Contig U35_11557

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6181_PI390587928	Hv_44K_v2	TACGGACTATATGCAGCTTGTCCAACTTTTGTTGTGACTCAGCTGAATGCATGATTTTTT	667	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.726	1.824	1.155	0.800	0.372	0.476
Raw	959.635	1610.559	884.515	961.150	156.808	218.004

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81660.1	2634	2e-24	578 - 637	100	60 / 60	minus	None
MLOC	MLOC_81659.1	2126	2e-24	1721 - 1780	100	60 / 60	minus	ABC03996
JLOC1	JLOC1_54315.1	2608	8e-25	1999 - 2058	100	60 / 60	plus
Harvest35	U35_11557	761	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (761 bp)

>U35_11557 761 Hv_44K_v2
TATCTAAACCAACCAAAGAACTTCAGGAGGCTAGGAAAGCTAGCCCTAAGAAAGCATCAA
CTACGTCAATTGTCAAGAAAAACAAGAAAGCGAAGGCTGATGATTCTGCAAGTAATGAAC
TCGATGCCGTTCCAGAACATGAAGCCATTGCAGAACAGGAAATAAGCAACACCCTGAAGC
ATTCCAGTCCCAAGAACTTCCGCTCAGGTTCTATAAAGCTGGGCGACGTAGTTACTGCAA
AGGTTTACCAAATAAGGGCCTATGGATTAGTACTTGAGCTGAGTGATGGAGTTCGTGGAA
TGCATAAGTTTGCGGAAAATAGCCAGACTAACTTTGAGGTTGGAGAGGAAGTGCTTGTGA
AATGCGCGACTTTCAGTGCCAAGGGTGTCCCAGTCTTCTCATTGCTTGATTAGTAAAATT
TTGATGGGGCTAATTTGCTCACCTCTAGAGCTCTACAGAGATACACTTGTAAATGTGTAG
TAGTTAATCCACTGACTTAATAAACATGGGAAGCAGCGAAGCAGCCTCAAATTTCGTTGG
AATGCTGCGCAAGTTTGTGCTTTTGCAGCCGTCGTGAGCATTTTGCTCCTGCATTTTTAC
CCTTCTAGCATGCAACCATGCATACGAGGAGGCAGGGAAAATTTGATCATGTGACTCGGC
TGAAACATACGGACTATATGCAGCTTGTCCAACTTTTGTTGTGACTCAGCTGAATGCATG
ATTTTTTTAATTTGTATTATATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_11557 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None