barSeed - Barley Seed Development Database

Probe CUST_6179_PI390587928

Source Contig U35_23530

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6179_PI390587928	Hv_44K_v2	AATGGATGAAGTTTTGCAGAGCATGAATCAGAACCTGTTCCGCACTCTTCCCAAGCTTTG	756	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26248.1	3325	2e-24	2293 - 2352	100	60 / 60	minus	ABC09063
JLOC1	JLOC1_17833.1	3421	8e-25	981 - 1040	100	60 / 60	plus
Harvest21	ABC20658	845	3e-25	757 - 816	100	60 / 60	plus
Harvest35	U35_23530	845	3e-25	757 - 816	100	60 / 60	plus

Contig Sequence (845 bp)

>U35_23530 845 Hv_44K_v2
GCATGAATATAAATGGACTTTTAAAGAAGGAGAAGTTGCAGTTTTGTCATTCCCTCGGCC
TGATTCAGCTCCACAGTCAAGTAATTCTAATAGGAAGACTGCTGGTTCATATAAAGATGC
CGAGTCAGAGTGTGGACGGCTTGTTGGTAGAGTCCGGCGCCATATGCCTACTGATACACG
TGATCCCATTGGAGCAATTGTCCGCTTTTATGCTGGAAACCCGTCTGATTCTAGCTGTGG
GACTAATGTTCTAGGGAAACTTCAACCTCAAAGCACCTGGTATCTAACTGGTCTCGGTTC
TCTTGCAACAACACAGAGGGAGTATATTGCGTTGCACGCATTCCGCTGTCTTAATGTGCA
GATGCAAAATGCAATTCTTCAGCCGAGTCCAGAACACTTCCCAAAGTACCAAGAGCAGCC
ACCTGCGATGCCTGATTGCTTCACTCCAAATTTTTCTTGTCATCTCCATCATACATTCAA
TGGGCCTCAGCTATCAGCAATTCATTGGGCTGCAATGCATACAGCTGCTGGCACAGGCAA
TGGAGTAGTGAAGAAACAAGAACCATGGCCTTTCACATTGGTACAAGGTCCTCCAGGGAC
AGGGAAAACTCATACTGTTTGGGGAATGTTAAATGTTATTCATCTTGTTCAGTATCAACA
TTACTATGCTGCTCTGCTAAAAAAGCTTGCTCCTGAAAGTTACGAGCAAGTTGCTGGTAG
TGGTAGCAGCGCCTCAAAAGCTGTTGCCGCAGGCTCAATGGATGAAGTTTTGCAGAGCAT
GAATCAGAACCTGTTCCGCACTCTTCCCAAGCTTTGCCCCAAACCGCGGATGCTTGTTTG
TGCCC

Homology of Contig U35_23530 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi4g14650.1	1164	3e-170
Arabidopsis v10	AT2G19120.1	1090	2e-112	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:8287036-8291802 REVERSE LENGTH=1090