barSeed - Barley Seed Development Database

Probe CUST_6178_PI390587928

Source Contig U35_23531

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6178_PI390587928	Hv_44K_v2	GCTTGAGCCGCTCGTCCCTTCCATTCTTAAGAATCTCGAGCACCGCCACCACTTCATCCG	403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54627.4	2851	2e-24	458 - 517	100	60 / 60	plus	ABC04534 ABC04535
MLOC	MLOC_54627.1	3422	2e-24	2891 - 2950	100	60 / 60	minus	ABC04534 ABC04535
MLOC	MLOC_54627.2	3649	2e-24	3077 - 3136	100	60 / 60	minus	ABC04534 ABC04535
MLOC	MLOC_54627.3	3385	2e-24	2861 - 2920	100	60 / 60	minus	ABC04534 ABC04535
JLOC1	JLOC1_35171.3	3388	8e-25	457 - 516	100	60 / 60	plus
JLOC1	JLOC1_35171.2	3423	8e-25	469 - 528	100	60 / 60	plus
JLOC1	JLOC1_35171.1	3636	8e-25	457 - 516	100	60 / 60	plus
Harvest35	U35_23531	475	3e-25	404 - 463	100	60 / 60	plus

Contig Sequence (475 bp)

>U35_23531 475 Hv_44K_v2
GGGTCAACCCGCCCAGATCCAGATCCACTCTGCCCAGGCCTGATCCAACCACCATCAACC
CACCCGCCGGCGCCATGGACAAGCCGTCGACGCTGCTTGTCCACTTCGACAAGGGCTCCG
CCGCCATGGTGAACGAGATCAAGGCGGATCTGGAGGGCAGCGACGTCGCCGCCAAGGTCG
AGGCCATGAAGCGCGCCGTCATGCTCCTCCTCAATGGCGAGACACTGCCTACGCTCTTCA
TCACCATCGTCCGCTACGTCCTCCCTTCCGAGGATCACACCATTCAGAAGCTGCTGCTCC
TCTACCTCATCTGCCAGAACCTTCGCAACAACCTGCAGCACCCCAACGAGTACATCCGCG
GCGTCACGCTGCGGTTCCTCTGCCGCCTCTCCGAGCTGGAGGTGCTTGAGCCGCTCGTCC
CTTCCATTCTTAAGAATCTCGAGCACCGCCACCACTTCATCCGCCGCCACGCGCT

Homology of Contig U35_23531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g17430.1	951	3e-64	protein\|coatomer subunit beta-1, putative, expressed
Brachypodium v1_2	Bradi2g10950.1	951	6e-66
Arabidopsis v10	AT4G31490.1	948	2e-56	Coatomer, beta subunit \| chr4:15269460-15272693 FORWARD LENGTH=948