barSeed - Barley Seed Development Database

Probe CUST_6174_PI390587928

Source Contig U35_23536

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6174_PI390587928	Hv_44K_v2	TTATCTATGGCTAATTCTGGCCCCAACACAAACGGATCTCAGTTTTTCATCACTACTACC	481	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362495	1519	2e-24	468 - 527	100	60 / 60	plus	ABC14897 ABC38453
MLOC	AK249140.1	1559	2e-24	469 - 528	100	60 / 60	plus	ABC14897 ABC38453
MLOC	MLOC_59220.2	2114	2e-24	529 - 588	100	60 / 60	plus	ABC14897 ABC38453
MLOC	MLOC_59220.1	1866	2e-24	529 - 588	100	60 / 60	plus	ABC14897 ABC38453
MLOC	MLOC_59220.3	1908	2e-24	529 - 588	100	60 / 60	plus	ABC14897 ABC38453
JLOC1	JLOC1_38525.1	1951	8e-25	591 - 650	100	60 / 60	plus
Harvest21	ABC20833	547	3e-25	482 - 541	100	60 / 60	plus
Harvest35	U35_23536	547	3e-25	482 - 541	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_23536 547 Hv_44K_v2
GGTTATTCTCCCGTGGTAACCGACGAGTGCCACCACCATCTCCGCTCTTCCGCCGCACCT
CCAGAACCTCCACCCAGGCTAGGGTTTGATCCCCAGTCCATTCTTCGGAGCAATGGAGGG
CGGAGGCGAGGGCGCAGCACCGCCCGCGGCGGCGGCGGCGGCGGCGGATGTGAAAAACCC
GAGGTGCTTCATGGACATCACCATCGGCGGCGAGATGGAGGGGAGGATCGTGATAGAGCT
GTACGCGTCCGTGGTTCCGCGGACGGCGGAGAATTTCCGCGCTCTCTGCACCGGAGAGAA
GGGCGTCGGCAACTCCGGCAAGCCGCTGCACTACAAGGGATCATACTTCCATCGCATTAT
CAAAGGTTTTATGGTACAAGGTGGAGATTTTACTGCTGGTGATGGAACAGGGGGGGAGTC
GATTTATGGATCGAAGTTTGAGGATGAAAATTTTATTTTAAAGCATGAGAGGAAGGGAAT
ATTATCTATGGCTAATTCTGGCCCCAACACAAACGGATCTCAGTTTTTCATCACTACTAC
CCGAACA

Homology of Contig U35_23536 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11320.2	397	9e-65	protein\|peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed
Brachypodium v1_2	Bradi1g45800.1	391	9e-70
Arabidopsis v10	AT2G15790.1	361	3e-58	\| Symbols: SQN, CYP40 \| peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase \| chr2:6878144-6880743 REVERSE LENGTH=361