barSeed - Barley Seed Development Database

Probe CUST_6171_PI390587928

Source Contig U35_35510

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6171_PI390587928	Hv_44K_v2	CTAACCTCTGTTCTTTTGCCAATTTGTGATTTTACAGGCTTTGAGATCTTGGCTTTCCCA	330	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.815	0.930	1.409	1.029	0.986	1.003
Raw	5.443	10.165	15.071	14.832	4.853	6.072

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68518.1	3395	2e-24	1136 - 1195	100	60 / 60	plus	ABC02453 ABC29064 ABC38848
JLOC1	JLOC1_45342.2	3176	8e-25	2440 - 2499	100	60 / 60	minus
JLOC1	JLOC1_45342.1	3170	8e-25	2434 - 2493	100	60 / 60	minus
JLOC1	JLOC1_45341.5	5520	8e-25	1100 - 1159	100	60 / 60	plus
Harvest35	U35_35510	531	3e-25	331 - 390	100	60 / 60	plus
Harvest35	U35_726	885	2e-21	329 - 387	97	58 / 60	plus

Contig Sequence (531 bp)

>U35_35510 531 Hv_44K_v2
GGTGTTATTAGCATACTTGATTGTCCAAACTAATGATCGTCTACATCGACTCTGTATTGA
ATAAATTCCATAGCAAAGCTTGCTTGTTCAGCTACGCTGCTAATTATTCTATATGGCCAA
TTGTTCCAGTGGCTTAACTAACTCCAACTATACCGATCTGAGCCAGCTGTACCCCAAGTA
CAAGGACCAAGGTTTTTCTTCATCCATTATTTTTTATACCCTTTACCGTGTTATTATATG
TATGTATTGTCATATGGATTACTGGGTTTAATCTGCTTATTGCTAAATACTAGTTACTAG
ATTTAAACAACAAATTCCGGTTATTGGATGCTAACCTCTGTTCTTTTGCCAATTTGTGAT
TTTACAGGCTTTGAGATCTTGGCTTTCCCATGCAATCAGTTTGGTGGGCAGGAGCCTGGC
ACCAATGATGAGATCGTTCAGTTTGCCTGCACTCGCTTCAAGGCCGAGTACCCCATTTTT
GACAAGGTTGATGTCAACGGCAACAATGTTTCTCCCCTATACAAGTTCCTG

Homology of Contig U35_35510 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None