barSeed - Barley Seed Development Database

Probe CUST_615_PI390587928

Source Contig U35_38037

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_615_PI390587928	Hv_44K_v2	CCATACAAGATCAAGATCATTGTAAGGACCAAGAACCTTTGTCTCCTCTGTTCAAACGGT	574	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250843.1	2010	2e-24	1396 - 1455	100	60 / 60	plus	ABC01560 ABC01562 ABC36496 ABC50157
MLOC	MLOC_73159.2	2351	2e-24	1533 - 1592	100	60 / 60	plus	ABC01560 ABC01562 ABC36496 ABC50157
Harvest21	ABC33816	637	3e-25	575 - 634	100	60 / 60	plus
Harvest35	U35_38037	637	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_38037 637 Hv_44K_v2
GCTGGGATGATGAGGAGGATGGCGAGTGGGAGGCACCAAAGATCGATAACCCCAAGTGTG
AAGAGGCACCTGGATGTGGTGAATGGAAGAGGCCGATGAAGCAGAACCCTGCATACAAGG
GCAAGTGGCATGCACCCCTGATTGACAACCCCAACTACAAGGGAATCTGGAAGCCCCAAG
AAATCCCCAACCCTGAATACTTTGAGCTTGACAAGCCTGACTTTGATCAGATTGCTGCTA
CTGGAATTGAGATCTGGACAATGCAGGATGGCATCCTTTTTGACAACATTCTAATTGCTG
ATGATGAGAAGGTAGCCATGTCTATCTTGGAGAAGACATGGAAGCCTAAGTTTGTTGTTG
AGAAGGAAAAGCAGAAGGCTGAGGAGGCTGCAGCAGCCGAGTCAGAGGACCTTTCTGAGT
TCCAGGTAATTCATTCTTCCGATGTTTCCGTTACATTACATTTGCCCTTCATTGTGTTGC
TGCATGCATGTTATGGCTAACTAATTTGGTATGTGTAATGCAGAAGAAGATCTTCAGCGT
TTTGTACAAAATCGCCGACATTCCGTTCTTGGAACCATACAAGATCAAGATCATTGTAAG
GACCAAGAACCTTTGTCTCCTCTGTTCAAACGGTCCT

Homology of Contig U35_38037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32950.4	286	7e-84	protein\|calreticulin precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g01430.5	472	2e-78
Arabidopsis v10	AT5G61790.1	530	5e-69	\| Symbols: CNX1, ATCNX1 \| calnexin 1 \| chr5:24827394-24829642 REVERSE LENGTH=530