- Probe CUST_6152_PI390587928
- Source Contig U35_23542
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6152_PI390587928 | Hv_44K_v2 | TATACCTCTCCAAAACATACTCATAATTGTCATGTATGTGGAGGCATAGCTATCTTTGCC | 447 | GeneList: darkslateblue MasterList: Pathogenesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.652 | 3.256 | 1.382 | 0.488 | 0.054 | 0.010 |
| Raw | 2383.213 | 7684.947 | 2691.423 | 1547.438 | 61.820 | 5.669 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53613.1 | 569 | 2e-24 | 37 - 96 | 100 | 60 / 60 | minus | ABC20818 |
| JLOC1 | JLOC1_34461.1 | 521 | 8e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC20818 | 557 | 3e-25 | 448 - 507 | 100 | 60 / 60 | plus | ABC20818 |
| Harvest35 | U35_23542 | 557 | 3e-25 | 448 - 507 | 100 | 60 / 60 | plus |
Contig Sequence (557 bp)
>U35_23542 557 Hv_44K_v2 AAAGAAACCACCAACTAGCTTGCTCAAAGCTTAAGTATGGCGCTAACAAAGATTGCCCTC TTCTTTGCCCTCAACCTTCTTCTCAGTGTTGTTGTGCATGGTAACCCACCAATTGTCCCT ACATCACCTTCCGCCCATACCCCACTTGTTGCACCAGCGCCTTCGACTGGTGTTTCATGC CCAATCAACCCATTAAAGATAACGGTGTGCAGCAATGTGTTGCTGCTACTGAAGCTCCGG ATCAACGTGCCGGAGACCGAGCAATGTTGTCCACTTCTTAGTGGGTTGGCTGATCTTGAT GCCGCTGTCTGTGTCTGCACTGCCATCAAGGCCGACCTCCTTGGAGTCATCACTATTGAT ATTCCCGTCGACCTTACCCTCCTACTAAACCATTGTAACAAGACATATCCATCTAGTTTC ACCTGCTTGCGATGAGCCATGACCAACTATACCTCTCCAAAACATACTCATAATTGTCAT GTATGTGGAGGCATAGCTATCTTTGCCAATTAATTAATAAATTTTATTTAGTTTTCAAGT TAAAAAAAAAAAAAAAA
Homology of Contig U35_23542 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |