barSeed - Barley Seed Development Database

Probe CUST_6151_PI390587928

Source Contig U35_23543

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6151_PI390587928	Hv_44K_v2	GTATATACTGCTGATGTACTGACTTTACTGTGGATAAGGAAATATACGGATGGAGCCGCC	779	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.596	1.501	1.420	0.750	0.258	0.310
Raw	633.473	889.939	756.306	631.550	75.011	100.671

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4843.1	2315	2e-24	2236 - 2295	100	60 / 60	plus	ABC10438 ABC19055
JLOC1	JLOC1_3069.1	2049	8e-25	1848 - 1907	100	60 / 60	plus
Harvest21	ABC19055	905	3e-25	780 - 839	100	60 / 60	plus	ABC19055
Harvest35	U35_23543	905	3e-25	780 - 839	100	60 / 60	plus

Contig Sequence (905 bp)

>U35_23543 905 Hv_44K_v2
AGGGACCATGCCGTGCAGATGTACCAGGGGCACAGCCAGGAGGTGTGCGGGCTCAAGTGG
TCTGGCTCAGGGCAGCAACTGGCGAGCGGTGGCAACGACAACCTTTTGCACATTTGGGAC
GTGTCGATGGCATCCTCCATGCCGTCTGCAGGCCGCAACCAGTGGCTGCACCGGCTTGAG
GACCACACGGCCGCTGTGAAGGCGCTCGCGTGGTGCCCATTCCAGAGCAACCTGCTGGCA
ACTGGTGGTGGCGGTAGCGACCGCTGCATCAAGTTCTGGAACACGCACACCGGTGCATGC
CTGAACTCTGTCGATACTGGATCACAGGTGTGCTCCCTTCTGTGGAACAAGAATGAGAGA
GAGCTGCTGAGTTCGCACGGATTCACGCAGAACCAGCTCACATTGTGGAAGTACCCTTCC
ATGGTCAAGATGGCTGAACTCACTGGCCATACCTCCCGTGTTCTTTTCATGGCACAGAGT
CCTGATGGTTGCACGGTAGCATCTGCTGCTGCAGACGAGACCCTCCGCTTCTGGAACGTG
TTTGGCACTCCTGAGGTAGCCAAGCCTGCACCAAAGGCTTCACACTCCGGCATGTTCAGC
AGCAGCTTCGCCCATATCCGATAAGACGAACAATGCGTTCTCTTGAACTCATGGCTTCAC
ACTCCGGCATGTTCAGCAGCAGCTTTGCCCATACGATAAGACGAACAATGCCAACAATCT
CTTGAACTCATGGTCCTATGGGCAGCTGTGTGTGTACAGAAAATAGGCTAAATACCTGGG
TATATACTGCTGATGTACTGACTTTACTGTGGATAAGGAAATATACGGATGGAGCCGCCG
CAATTCGGCTCCCCGGGGAGCGTAGGCAACATTGCCGAACCTCGTTAACAAAAAAGAAAA
AAAAA

Homology of Contig U35_23543 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47180.1	470	4e-140	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g20910.1	469	7e-144
Arabidopsis v10	AT4G33270.1	457	2e-115	\| Symbols: CDC20.1 \| Transducin family protein / WD-40 repeat family protein \| chr4:16044545-16046590 REVERSE LENGTH=457