barSeed - Barley Seed Development Database

Probe CUST_6148_PI390587928

Source Contig U35_23547

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6148_PI390587928	Hv_44K_v2	AATAATCTCCCCGTGTTGAGGCTACATATTGTTGAAGTAAATCCAGAGCAGGAGCCTCTG	549	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.987	0.967	1.457	1.160	0.706	0.563
Raw	17.164	22.456	33.540	37.547	7.965	7.826

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18966.1	2301	2e-24	1521 - 1580	100	60 / 60	minus	ABC17329
JLOC1	JLOC1_13140.1	2272	8e-25	1492 - 1551	100	60 / 60	minus
Harvest21	ABC19694	738	3e-25	550 - 609	100	60 / 60	plus
Harvest35	U35_23547	738	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (738 bp)

>U35_23547 738 Hv_44K_v2
GGAACCCACCGCCGCCCTTCCCCCGCCGCCCTTGGTGCCTCGGCCGTTGTGGCCGGCCTT
GGCCCATCCCTCCCTTCCCGCCCCTTCCCAAAGAAACAATCGCCTCCGTCGCCTCCTCCT
CCGCAGCAGCAACCAGCTCCTGCGATGACTAAATTTAATTCCTCGCCAGCGCCCAAGTTG
GTGCCCTTCTCCAACTCTCCGTCATCTTCTGCCAAGGCTTCAACTGCTGATATTTCTCAC
AAGACTGTGCCAGCGCTGTCAGTGCCCTCAACCCAACCAGTGACGGAGACATCACTCATT
AACAGGAAGGTTGTGACGAGATGGAGGCCTCTCAAGCTGGTGTATGGCCATGACATTAGG
CTTGGGCAGATGCCTGAAAAATGCAGCTTCCATGAGCTCAGGGAAGTTGTGGCGAAGCGC
TTCCCATCATCCAAGGCGGTGTTGATGAAGTATAAGGATGCCGATGGTGATCTAGTTACC
ATCACTTGCACATCAGAACTCCGATTGGCCGAGGCTTGTGGTGTTGGCATGGATGTAAAG
GAAGGTGATAATAATCTCCCCGTGTTGAGGCTACATATTGTTGAAGTAAATCCAGAGCAG
GAGCCTCTGCCAACAGAAGAGCAGAAGCTGGAGGAGGAGGAGGAGTTGTTGATCACCGGT
GAGGATAGCTCTTCACATACTTCTGCAGAGGTAGCTAATGTCGAGGTGGCAAAACCAGAT
CTGGAGAACGGAGTTGCT

Homology of Contig U35_23547 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g04990.1	788	2e-52	protein\|cytoskeletal protein, putative, expressed
Brachypodium v1_2	Bradi1g33010.1	782	7e-77
Arabidopsis v10	None