barSeed - Barley Seed Development Database

Probe CUST_6146_PI390587928

Source Contig U35_23549

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6146_PI390587928	Hv_44K_v2	ATTACAGCACAGGATCAGCCCTGATGATGAAGTCACTAATGAAGAGGAAACAAAATGGCG	566	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.626	1.522	1.057	0.776	0.383	0.341
Raw	304.875	392.916	266.463	313.039	53.131	52.528

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373333	1318	2e-24	581 - 640	100	60 / 60	plus	None
MLOC	MLOC_69463.1	1035	2e-24	276 - 335	100	60 / 60	plus	None
MLOC	MLOC_69463.2	1042	2e-24	283 - 342	100	60 / 60	plus	None
JLOC1	JLOC1_46025.1	1243	8e-25	335 - 394	100	60 / 60	plus
Harvest21	ABC19382	626	3e-25	567 - 626	100	60 / 60	plus
Harvest35	U35_23549	626	3e-25	567 - 626	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_23549 626 Hv_44K_v2
CAGCTCCATCCAGGCCGAGACGCGAAGCCCCTCCCCACCCCCCTCCCACCCCCGACGCCG
ACGAGGCGGCCGCTCCTCCGGCGAAACCCTAGGGCCACGATGAGGTCGCTCCGCGCGGCG
CAGACCCTGCTCGCCTCCCGCTCGTTCCTCCTCTCCTCGCGCGCGCTCCACGCCGCCGCG
GCCTCCCCCGCCGCGGCCGGGCGCTGGGGCAACGCCCCGCCGCCGCCACCTACGCCGACG
CCCTGCCCGGGGCCGTCGTCCCGGGCCGGGATCGCCGGCGCGGTCTCCTTCTCCCTGACG
TTCGCCACGGTGGCGGTGGCCGAGGTGCAGGCCAAGGAGCGGCTGCCCTCGGATCTGCTG
CCCCGGAACGTCGTGCTCTACCAGTACCAGGCCTGCCCCTTCTGCAACAAGGTCAGAGCT
TTCCTAGACTATCATGATATACCCTACAAAGTTGTGGAAGTTAATCCACTGAGCAAAAAG
GAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATATTGACGGTAGATGGTGAACATCTG
GTTGATTCTACAGACATAATCAATATATTACAGCACAGGATCAGCCCTGATGATGAAGTC
ACTAATGAAGAGGAAACAAAATGGCG

Homology of Contig U35_23549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g17050.1	320	6e-66	protein\|glutaredoxin family protein, expressed
Brachypodium v1_2	Bradi5g04550.1	315	6e-73
Arabidopsis v10	None