- Probe CUST_6143_PI390587928
- Source Contig U35_35522
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6143_PI390587928 | Hv_44K_v2 | TGATTGGAATACCTATGCCGTTGTGGCGAGCAACTACCTTACTAGCAACCTAACAGAGAA | 13 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.381 | 1.164 | 1.022 | 0.865 | 0.534 | 0.529 |
| Raw | 178.954 | 217.356 | 180.494 | 231.570 | 51.468 | 56.429 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_35522 | 101 | 3e-25 | 14 - 73 | 100 | 60 / 60 | plus |
Contig Sequence (101 bp)
>U35_35522 101 Hv_44K_v2 TCGGTCTTGTTGTTGATTGGAATACCTATGCCGTTGTGGCGAGCAACTACCTTACTAGCA ACCTAACAGAGAAGGCCCTCTCTGCCTTGAAGAAAGCACAA
Homology of Contig U35_35522 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |