barSeed - Barley Seed Development Database

Probe CUST_6133_PI390587928

Source Contig U35_5075

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6133_PI390587928	Hv_44K_v2	ATTACTATTATTACGAAGAAACTAGCACCACTGAGGCACCTACAATGACTCGATCGCCAT	813	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.874	2.651	1.294	0.731	0.295	0.416
Raw	561.174	1198.278	518.715	477.029	63.350	100.857

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354660	1730	2e-24	1590 - 1649	100	60 / 60	plus	ABC12271 ABC12272
MLOC	MLOC_35140.1	483	2e-24	320 - 379	100	60 / 60	plus	ABC12271 ABC12272
JLOC1	JLOC1_22705.1	493	8e-25	320 - 379	100	60 / 60	plus
Harvest21	ABC12272	487	3e-25	325 - 384	100	60 / 60	plus	ABC12272
Harvest21	ABC12271	802	3e-25	637 - 696	100	60 / 60	plus	ABC12271
Harvest35	U35_5075	979	3e-25	814 - 873	100	60 / 60	plus

Contig Sequence (979 bp)

>U35_5075 979 Hv_44K_v2
GGGGATACGCATGCTAGAGACTTTCTCCAGCAGGTACTCCTCTGTCAAAGGGCAAAAGTT
GTTATGATGCTAACACTGGTAGATCAAAGGGCTATGGCTTTGTGCGTTTTGGAGATGATA
GTGAGAAGACAAACGCCATGACCGAGATGAACGGAGTGTATTGCTCAACTAGGCCCATGA
GGATTGGCCCTGCAACTCCCAGAAAATCTTCAGGTACTTCTGGGTCTACTGGTTCATCCG
CTCGATCAGACGGAGATTTGACAAACACAACTGTATTTGTCGGTGGGCTTGACCCAAATG
TTAGTGAAGATGATCTGAAGCAAACCTTCTCCCAGTATGGTGAGATTTCCTCTGTGAAGA
TTCCAGTTGGGAAACAGTGCGGGTTCGTGCAGTTTCTTCAGAGAAAGAATGCAGAAGATG
CATTGCAAGGGCTAAACGGGAGCACCATCGGGAAACAGACCGTGCGCCTTTCATGGGGTC
GCAATCCAGCAAACAAGCAGTTGAGGAGTGACAATGGCAACCAGTGGAACAACGGGATGT
ACTACGCGCCCTCGCCGTTCTACAACGGGTACGGCTACCCCGCGGCACCGTTCCCTGACC
CGGGCATGTATGCCGCCGCCTATGGTGCGTACCCGCTCTACGGGAACCAGCAACAGGTCA
GCTGAAGATAGGAGGTTCACTTCACACGCCCATCGCTCGACAACAATCCGAGGCGCGCAC
GCATGCAGTAGCTGTAGCTCTTGCTAGGGAAAGAAGGTAGACGACGACGGTTTCTTAGGT
GAGCTAGATGTAGTGACTGGTCATGTAAAGTACATTACTATTATTACGAAGAAACTAGCA
CCACTGAGGCACCTACAATGACTCGATCGCCATGGTCGTCTAGCTGGATTGTTCTAGGGA
AAAAAAGAAGTTTTGGCCTAGAGCTGCAATATTAATTAAGGTAGAACAATAATCTATTCA
AAAAAAAAAAAAAAAAAAA

Homology of Contig U35_5075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28810.1	346	5e-109	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi4g32380.1	432	4e-112
Arabidopsis v10	AT1G47500.1	434	7e-73	\| Symbols: ATRBP47C, RBP47C \| RNA-binding protein 47C \| chr1:17432682-17434805 FORWARD LENGTH=434