barSeed - Barley Seed Development Database

Probe CUST_6130_PI390587928

Source Contig U35_5078

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6130_PI390587928	Hv_44K_v2	ATAACCTGTACATCACGCGATATTGACCTGGTGATTTGGAGACTGAAAATCTGTCGTTTC	880	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.022	1.742	1.151	0.703	0.259	0.306
Raw	5161.347	6938.633	4014.713	3870.753	499.132	642.832

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6215.2	2079	2e-24	20 - 79	100	60 / 60	minus	ABC13463
MLOC	MLOC_6215.4	2382	2e-24	4 - 63	100	60 / 60	minus	ABC13463
MLOC	MLOC_6215.3	2004	2e-24	20 - 79	100	60 / 60	minus	ABC13463
MLOC	MLOC_6215.1	2028	2e-24	45 - 104	100	60 / 60	minus	ABC13463
JLOC1	JLOC1_4039.1	2017	8e-25	1925 - 1984	100	60 / 60	plus
Harvest21	ABC13463	962	1e-24	881 - 939	100	59 / 59	plus	ABC13463
Harvest35	U35_5078	964	3e-25	881 - 940	100	60 / 60	plus

Contig Sequence (964 bp)

>U35_5078 964 Hv_44K_v2
GTCAAGTAAGAGTGAATTTGCGGTTCTTTCTCTTCTAAGCTGTCCTGAAGGAGGAGCACC
GGCAGAGCAAGATGGGGTAATACTGATTTTTGATGCAGAAAATTCAAAACCGGTTTCCTC
CTGGTCTGTAAAGAAGGCAAAAGGAGGTAGCATTGCTTTTGTGAAGGCCGATCCCTCTTT
GGATTCAAACACTGACGACACAAGTGGAGATGCTTCATTGCTGGTTTATGTAAATGGTTC
ACATGAATATGTTATCTTTGATCCCCGAAACAATGAGGAGCTGCAAATCAGCAAGAGCAC
ACGGAAAAACATTCAAGCCGATGAACCTGCACCAATCGGTTATGCTTCTATTTATGGAGA
ACTTCCAAAACTGGAACTGAACAAAGAGGTTTCGGATATTCCATTTATCCCATCAGAGAG
ACCCTGGGAAACTATATTCACTGGATCTTCTCATGCTCTCCCGCCCCTCACGAAACTGTG
TTCTGTTTTCTTGTCATCATTGCTGGAGAAGAGACCAGTTACAGGGGAGTGAGAAGCTTC
CGCCGAAGTTTTGTCGCATTATATAATGGTATACTTGCTAGTTGCAGTTGTCAGTGTAGA
AGCAAACGAACGCTGACTCGTGCCGCCAAGGCAAACGGTCTGTGCCCAGAAGACCACAGT
ATCATGGACATTGATGCTTGTCATGCAACCCGGTGGGCGATGGCAATGGAATTTGGTGAT
TGGATCAGAGCTCCTTGTGTAGTGATATTTAGTAGTGTCAGTGAATCAGTGTACCCATCC
TAGCAATTTTGCCCGTCACAGTTTAATCTGTAATCTGAACTCTTTTGTGATAATTGAGTG
TTTTCAGCCAGTGAAGAGTTTGTGGCATGACGATACAGTCATAACCTGTACATCACGCGA
TATTGACCTGGTGATTTGGAGACTGAAAATCTGTCGTTTCTATTATTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_5078 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41620.1	798	1e-82	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g02100.1	794	1e-86
Arabidopsis v10	None