barSeed - Barley Seed Development Database

Probe CUST_6127_PI390587928

Source Contig U35_5081

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6127_PI390587928	Hv_44K_v2	CCATATTTTTTATACCCACCCAACATACAGCATAACTGATGTCCATGATTTTCCTTGAAA	1432	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.090	1.970	1.087	0.816	0.520	0.786
Raw	121.260	181.451	86.477	102.443	22.210	37.617

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_37619.7	3064	6e-21	2964 - 3019	98	55 / 56	plus
JLOC1	JLOC1_37619.6	3075	6e-21	2975 - 3030	98	55 / 56	plus
JLOC1	JLOC1_37619.5	3021	6e-21	2921 - 2976	98	55 / 56	plus
JLOC1	JLOC1_37619.4	3010	6e-21	2910 - 2965	98	55 / 56	plus
JLOC1	JLOC1_37619.3	2983	6e-21	2883 - 2938	98	55 / 56	plus
JLOC1	JLOC1_37619.2	3031	6e-21	2931 - 2986	98	55 / 56	plus
JLOC1	JLOC1_37619.1	3041	6e-21	2941 - 2996	98	55 / 56	plus
Harvest35	U35_5081	1503	3e-25	1433 - 1492	100	60 / 60	plus

Contig Sequence (1503 bp)

>U35_5081 1503 Hv_44K_v2
GATTAAAATCTATGCTGAAGGAGGCCTGGGTTATTCTGCCCATGGTTTAGGCACAGAGCT
TGAGTTCTATGATCTTCTGCGAAAAGTTGGCTCGCCTTTGATCAACCACATCCCTGAGAT
CATTGCAAGTGGATATCTTGTGTACGAAAATGGCATCTACAGAACAGTCCCATGGGATGG
AAAAGGAATGCCAGATGTTTTGGCTAAATACTATCCTCTGAAGCTTTCTTATGCAAACAG
CTGTTTTCCTCTTGGATTATGGAGCAAACAACAGTTTGGAATGGATAGTTCCACTGAATG
TTCAAACAAACCTATTTGGCCTTACATGGTTACCAGAAAATGCAAAGGGGAAATCTTTGC
TCGCGTCCGTGATACATTGTCCAAGGCTGACCTTTTGAATCTTGCATCATCCTTGGGAGT
TCAAATGCGAAATATCCATTTATTACCCCTTCCAGATGGGGAATCGTTACCCAAACCTGA
AGAAAATAATGTGAAAGACAGTGATCCACCTGAATGGAAACAAGTAATTTCTATTCTAAA
CGGAAGAAGGAATAATATAAAGAAGCACCTAGCTAACTGGGGGGGTACTGTCCCAACAGT
TTTAATTGAGAAGGCTGAAGAATATCTCCCTCCTGATATGAGCTCTCTAATCAAGTTTGT
TAAGGATGATGATGGTGACTCGGTGTACACATTCCCTTCTTGGATACATTCAGATATCAT
GGACGATAACATTCTTACTCAAAGGTCCCTCACTGATGCCAAAAGCACTGGTGACATAGA
TCTGGAGAAACTGGATGCAATTAATATCATTGACTTCAGTGATCTGTCCATTGGTGATCC
TCTGTGTGACTTGATTCCGCTGCACCTGGATGTTTTTCGTGGTGATATTGATCTTCTCAG
GGAGTACCTAAGAAGCTATCAACTTCCTTTCTTAAGAGGGAAATCAAACAACGATATCTA
CAAGTCGGTGCGAAATTCGAAGTTCAGCACTGCATCATATCGCGCGATGTGCTACTGCAT
GCTGCATGAGGACAATGTGCTGGCGGCTATATTCGGGCTGTGGAAGGAACTGCGGACCGC
AACGTCGTGGGAGGAGGTCGAGCACTTGGTCTGGGATGACCTCAACCGTTACCAGCAATC
GTCGCCTACACCCTCTAGCTAGCAGACTCGTCACGACTAACGCCCAGAAGAAATAATGCC
TACTGCTCCGTTACCCCCTTCTAGTACATATTACACAGCTTCGTTCGTTTAAGAGCGGCA
AAGAAACTATAAGGGGCAAAACATTTTGTTTACTCTTGTGTGTAGCAGCTTTGTTTTTTT
TTTCTTTCATTTTCTTCTCTTTTGGGAGAGAGCAGCTGTGCCCTTGAATGAGTCATGAAG
CGTGCAGTTGTACCGCATACCAGTGTGACACATTGGATATTTGTAAGAAATGCCATATTT
TTTATACCCACCCAACATACAGCATAACTGATGTCCATGATTTTCCTTGAAAAAATAAGA
AAA

Homology of Contig U35_5081 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g27250.1	954	0.0	protein\|OsFBO14 - F-box and other domain containing protein, expressed
Brachypodium v1_2	Bradi1g60740.1	950	0.0
Arabidopsis v10	AT1G78280.1	943	1e-103	transferases, transferring glycosyl groups \| chr1:29452823-29457118 FORWARD LENGTH=943