barSeed - Barley Seed Development Database

Probe CUST_6125_PI390587928

Source Contig U35_5083

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6125_PI390587928	Hv_44K_v2	TGGAAAATGGCTTGCTTAATCTTCCAGGCGGCGGAGCACATATAGGAATTAAGAGAATGG	1627	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.811	1.026	1.397	1.576	0.857	0.888
Raw	86.960	171.037	205.966	365.512	68.940	79.203

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4670.1	2394	2e-24	1633 - 1692	100	60 / 60	plus	ABC11159 ABC15392
MLOC	MLOC_4670.4	2246	2e-24	1589 - 1648	100	60 / 60	plus	ABC11159 ABC15392
MLOC	MLOC_4670.2	2401	2e-24	1585 - 1644	100	60 / 60	plus	ABC11159 ABC15392
JLOC1	JLOC1_2938.2	2443	8e-25	1592 - 1651	100	60 / 60	plus
JLOC1	JLOC1_2938.1	2429	8e-25	1578 - 1637	100	60 / 60	plus
Harvest21	ABC11159	1706	3e-25	1628 - 1687	100	60 / 60	plus	ABC11159
Harvest35	U35_5083	1706	3e-25	1628 - 1687	100	60 / 60	plus

Contig Sequence (1706 bp)

>U35_5083 1706 Hv_44K_v2
CACCATTCCCCTCCCCCCTCACTCCCGCAGGACCCTAGCCGCCGCCGCCGCCGCCGCCCC
CCACCAGCCGGGCTTCTTCTCCTCCTCCCCGACCCCGGGTTCCTTCTCTGCCTCGGCGAC
CCAAAGTCACTGTTTCCGGCAGGTTGTCAAAAAAAAAAAAAATCCTTCTCGGAGATGGAA
TACAGCTCAGACGACGATTCGGATATCAGCGACTCCGAGATCGACGAGTACGAAGGCAAG
ATTAACGCCCGTCTGATTTCAGGAGACTTAAAGTTCAGGAATGGCGATAGCTACGGTTGC
CCATTCTGCACTGGCAAGAAGAACAAAGGTTACAACATGCAGAGCCTTCTTCAGCATTCC
TCGGGGGTAGGCGCAGCGCCTAATCGGCCGGCAAAAGATAAAGCGTCGCACCGCGCCCTC
GCCAAGCATTTGAAGAATGACGTTGCTAAACCTTCTGAGCCACAGCAACAGCAGCCGCAG
CAGATTGTTGTGGAGCCGCAGCCTCTTCCAAACAGACATGAGAAGTTTGTGTGGCCCTGG
ATGGGTGTTCTAGTTAATGTACCTACTGAATGGAAGGACGGGCGTCAGGTTGGAGAAAGT
GGTACTCGTTTGAAGGGGGAGCTGTCGCAATTTTGCCCGCTGAAGGTTATTCCTCTATGG
AATTTCCGAGGCCATACAGGGAATGCTATTGTTGAGTTTGCAAAAGACTGGAATGGTTTC
AGAAATGCACTTGCATTTGAACAGTACTTTGAGGCAGGCGGCTGTGGCAGAAGGGACTGG
AAGCAAAACCAGAATCAGGGGTCAAAGCTTTTTGGATGGGTTGCAAGGGCTGAAGACTAC
AATCTTTCGGGGCTAATCGGGGACCACTTAAGGAAAAATGCTGACTTGAAAACTATCGAT
GACCTTGAGAATGAAGGAACGCGCAAAAATAATAAACTTGTAGCTAATTTGGCTAACCAA
ATTGAGGTCAAGAATAAGTATTTAGAGGAGCTTGAACTTAGATACAATGAGACAACTGCG
TCACTTGAGAAGATGATGGGGCAAAGGGAACAACGTCTCCAAGCGTATAATGAAGAAATT
CGGAAGATGCAGCAGCTAGCTCGCAGACATTCTGAAAGAATTATTGATGAGAACCAAAAT
CTGCGTTCGGAACTGGAGTCCAAGATGAGTGAACTTAATGAAAGATCCAAAGAGCTTGAT
GACCTTTCTGCAAAAAGTTCTCATGACAGAAGTAATCTTGAGCAGGAGAAGCAGAAGAAT
GCTATTAAATCAAACCATCTTAAGTTGGCAACAGTGGAACAACAGAGAGCTAATGAGGAT
GTGGTGAAGCTTGTGAGAGATCAGAAGAGAGAGAAAGTTGCTGCATTAAACAAGATCCTG
GAGTTAGAACAGCAGTTGGAGGCAAAACAGACGCTTGAACTGGAAATACAGCAGCTGAAG
GGCAAATTGGAAGTGATGAAGCATATGCCAGGTCATGAAGATTCAGAGGCGAAGGATAAA
ATCAATCAACTTAGTGAGGAGCTGCAAGATAAGATGGATGAACTGGATGCTATGGAGTCA
CTTAACCAAACTCTGGTTATTAAAGAAAGCAAAAGCAATACTGAGATGCAAGAAGCTCGG
AAGGAGCTGGAAAATGGCTTGCTTAATCTTCCAGGCGGCGGAGCACATATAGGAATTAAG
AGAATGGGCGAGCTTGATCTGAAAGC

Homology of Contig U35_5083 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g44230.2	557	0.0	protein\|transcription factor X1, putative, expressed
Brachypodium v1_2	Bradi2g44450.1	629	0.0
Arabidopsis v10	AT3G48670.1	647	6e-114	\| Symbols: IDN2, RDM12 \| XH/XS domain-containing protein \| chr3:18031240-18033615 FORWARD LENGTH=647