barSeed - Barley Seed Development Database

Probe CUST_6122_PI390587928

Source Contig U35_5086

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6122_PI390587928	Hv_44K_v2	TTAGGATACATGAAGGGATCGAGAAGGATTGTGATTGGATATGATGAAGGGACTATTATG	1037	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.258	1.017	1.386	0.971	0.690	0.645
Raw	764.338	779.391	1148.890	1056.779	318.111	322.503

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7736.1	1121	2e-24	883 - 942	100	60 / 60	plus	None
MLOC	MLOC_7736.2	1100	2e-24	862 - 921	100	60 / 60	plus	None
JLOC1	JLOC1_5105.1	1455	8e-25	883 - 942	100	60 / 60	plus
Harvest21	ABC19987	1057	3e-25	998 - 1057	100	60 / 60	plus
Harvest35	U35_5086	1097	3e-25	1038 - 1097	100	60 / 60	plus

Contig Sequence (1097 bp)

>U35_5086 1097 Hv_44K_v2
AAGCCATCACCCACTTCCTCCTTCCCTCCCTTCCTCCTTCGTTCGCAAATCTTCTCTTCT
CCACGCCGCGCCCTCCCCCCTCCCCCTCCCGGTCCGGCGAGAGGCCGGCCACCCACGCGG
CTCCGCCTCTCACGCTCCCGCGCCCACAAACCCCCTAGGAACCTCGTCCTCCCGAGGTTC
CCGCTTCGGCGCGCTTCCGAGCCGCCACAATGCCGCTCCGGTTGGATATCAAGAGGAAGC
TCGCGCAGAGGTCGGAGAGGGTCAAGTCCGCGGATCTGCATCCGACAGAGCCATGGATTT
TGTCGAGTCTTTACTCGGGGAGTGTCTGCATCTGGAACTACCAAACGCAGACAATGGTGA
AATCATTTGAAGTCACAGAGTTACCGGTTCGTTCGGCTAAATTTATTGCACGAAAGCAAT
GGGTCGTTGCTGGTGCCGATGATATGTTTATCCGTGTGTACAATTACAATACAATGGATA
AGGTCAAGGTATTTGAAGCTCATACTGATTACATCAGGTGTGTGGCTGTTCATCCAACCC
AGCCTTTTGTGCTGTCATCATCAGATGACATGTTAATTAAGCTTTGGGATTGGGATAAGG
GTTGGGCGTGCACTCACATATTTGAGGGGCATTCTCACTATGTGATGCAAGTCACATTTA
ACCCAAAGGATACCAATACTTTTGCTAGTGCTTCCCTTGATCGCACGATAAAGATATGGA
GTATTGGTTCTCCTGATCCTAACTTCACATTAGATGGCCACTCAAAAGGTGTGAACTGTG
TTGATTACTTCACTGGTGGTGATCGACCATTTTTAATTACTGGCTCTGATGACCAGACTG
CAAAGGTTTGGGACTACCAAACCAAGAGCTGTGTTCAAACACTTGAAGGACATGCACACA
ATGTGTCCGCCGTCTGTTTCCATCCGGAACTACCTATTATAATTACTGGCTCAGAGGATG
GCACAGTTCGCTTGTGGCATTCTACAACCTACAGGCTTGAGAACACTCTTAATTATGGCC
TTGAGCGAGTTTGGGCTTTAGGATACATGAAGGGATCGAGAAGGATTGTGATTGGATATG
ATGAAGGGACTATTATG

Homology of Contig U35_5086 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g11830.2	908	protein\|coatomer subunit beta, putative, expressed
Brachypodium v1_2	Bradi3g07926.2	824
Arabidopsis v10	AT1G52360.2	970	Coatomer, beta subunit \| chr1:19499420-19505397 FORWARD LENGTH=970