barSeed - Barley Seed Development Database

Probe CUST_6120_PI390587928

Source Contig U35_5088

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6120_PI390587928	Hv_44K_v2	CTGATGACTTACACGACATGTTGATATATGTACGGGCTCTTTGCCATTACTGTCAAAAAA	734	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.065	0.935	1.301	1.216	0.558	0.457
Raw	905.361	1268.124	1519.067	2169.509	365.321	321.610

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64149.1	1677	2e-24	1552 - 1611	100	60 / 60	plus	ABC13214
JLOC1	JLOC1_42084.1	1551	8e-25	1450 - 1509	100	60 / 60	plus
Harvest21	ABC13214	855	3e-25	735 - 794	100	60 / 60	plus	ABC13214
Harvest35	U35_5088	876	3e-25	735 - 794	100	60 / 60	plus

Contig Sequence (876 bp)

>U35_5088 876 Hv_44K_v2
GCTCGGCGGGGATTTGGACCCCAGCTCCACAGTTGAGGTGATTGGTGAGGTTTTGGGGAG
AAATCCTCTTCCCAGTTCAGGTGGCAATTCACCCAATTCGGCGAGCCAAGCTGGGGAGCA
GACGAACTTGACTGGTGCTGTTAGCAATTCAAGGCTCAGGGAGTCACAGGTGCCGGATTT
GAGCTCTGGTTCTGCCAATGCACAAGCCAGAGAGGCGCTTGCATTGCCGGAGACTAGGCT
GGATATTGCTGAACTGAGGGTACCGTTGATCCAGCCACAGCCAGATAGAACCAGCTACGA
TGATGACGACGACGATGACACCGATGAAGATGGCATTGGGTTGGCCTCATCAGGGGCAAT
CAAGCTTGGGCTGGGAGACTTCATATTCTACAGCGTGCTCGTCGGGAGGGCGGCTATGTA
CGACTACATGACAGTCTACGCTTGCTACCTTGCCATCATTGCGGGGCTCGGCATCACTCT
GCTACTGCTGGCATTCTACCGCAAGGCATTGCCCGCACTACCGGTGTCCATCTCCCTCGG
CGTTCTGTTTTACGTGCTCACAAGAACATTGCTCGAGGCATTTGTTATGCAGTGCTCCAC
AAACTTTCTGATGTTTTAGCATTCCATGTTTGTATGTCATTACAGTTCACAATCAAGGCT
TTCTCCAGTTGGTTAGGCTGTAGTATTTGGGGAACTGTTTGTCCTGGTCAGGCCATGTTT
GTGAAACTGTTAATCTGATGACTTACACGACATGTTGATATATGTACGGGCTCTTTGCCA
TTACTGTCAAAAAAATTACAGTATTGATTCTGAAGAAGGTACTCCTACTTTTGTTTTGAA
AAAAAAAAAAGGCCAGTTGTGCTCGAGCTGCAGGTC

Homology of Contig U35_5088 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g40700.1	460	1e-60	protein\|presenilin, putative, expressed
Brachypodium v1_2	Bradi1g14960.1	398	1e-60
Arabidopsis v10	None