barSeed - Barley Seed Development Database

Probe CUST_611_PI390587928

Source Contig U35_14083

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_611_PI390587928	Hv_44K_v2	TGTCGCTGTTGAACTGCATCATTAGTACTTCGTGGAACAAGTATCTCGCTTAATTTGTTC	1579	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52788.2	2256	2e-24	1613 - 1672	100	60 / 60	plus	ABC00127 ABC00169 ABC00333 ABC00902 ABC00930 ABC50944
Harvest21	ABC50515	645	3e-25	106 - 165	100	60 / 60	minus
Harvest21	ABC38886	140	3e-25	29 - 88	100	60 / 60	minus
Harvest21	ABC29944	160	3e-25	51 - 110	100	60 / 60	plus
Harvest21	ABC00902	1661	3e-25	1563 - 1622	100	60 / 60	plus	ABC00902
Harvest21	ABC00674	1737	3e-25	1580 - 1639	100	60 / 60	plus
Harvest21	ABC00169	667	3e-25	18 - 77	100	60 / 60	minus	ABC00169
Harvest21	ABC52941	477	5e-23	22 - 80	98	58 / 59	minus
Harvest35	U35_38629	693	3e-25	145 - 204	100	60 / 60	minus
Harvest35	U35_14085	1470	3e-25	1306 - 1365	100	60 / 60	plus
Harvest35	U35_14083	1685	3e-25	1580 - 1639	100	60 / 60	plus
Harvest35	U35_14074	710	3e-25	634 - 693	100	60 / 60	plus

Contig Sequence (1685 bp)

>U35_14083 1685 Hv_44K_v2
CACTACACATCCGGCGTCTTCACAAACGCCGTCTCGCTCTCGCTCCGTCTCCCGCCTCCT
CCCCCCCCGCTCCGCCGCCAGATCCCGTCGAGCCAAGCCCACCCGCGTCGAAGATGAGGG
AGTGCATCTCGATCCACATCGGGCAGGCCGGCATCCAGGTCGGCAACGCGTGCTGGGAAC
TTTACTGCCTCGAGCACGGCATCCAGCCTGATGGCCAGACGTCCGGTGACAAGACCATCG
GAGGTGGTGATGACGCCTTCAACACCTTCTTCAGCGAGACTGGAGCCGGCAAGTACGTGC
CCCGTGCAGTCTTCGTCGATCTCGAGCCCACCGTGATTGACGAGGTCCGCACCAGCGCCT
ACCGCCAGCTCTTCCACCCCGAGCAGCTCATCAGCGGCAAGGAGGACGCAGCCAACAACT
TCGCCCGTGGTCACTACACAATCGGCAAGGAGATTGTGGATCTCTGCCTGGACCGCATCC
GCAAGCTGGCCGATAACTGCACTGGCCTGCAGGGCTTCCTGGTCTTCAACGCCGTCGGCG
GTGGAACCGGGTCTGGGCTTGGGTCGCTCCTTCTCGAGCGCCTGTCTGTTGACTATGGAA
AGAAGTCCAAGCTCGGGTTCACCGTGTACCCATCTCCTCAGGTGTCAACCTCTGTGGTTG
AGCCCTACAACAGTGTGCTGTCCACCCACTCTCTGCTGGAGCACACTGATGTCTCAATCC
TGCTCGATAACGAGGCCATCTACGACATCTGCAGGCGCTCCCTGGACATTGAGAGGCCCA
CCTACACCAACCTGAACCGCCTCGTCTCTCAGGTTATCTCATCTCTGACCACCTCCCTGA
GGTTTGATGGTGCCCTGAACGTGGACGTGACCGAGTTCCAGACCAACCTTGTGCCGTACC
CTAGGATCCACTTCATGCTCTCGTCCTACGCGCCGGTCATCTCGGCGGAGAAGGCGTACC
ACGAGCAGCTGTCGGTGTCGGAGATCACCAACAGCGCGTTCGAGCCGTCGTCCATGATGG
CCAAGTGTGACCCTCGCCACGGCAAGTACATGGCGTGCTGCCTCATGTACCGGGGCGACG
TGGTGCCCAAGGACGTGAACGCGGCCGTTGCCACCATCAAGACCAAGCGCACCATCCAGT
TCGTGGACTGGTGCCCCACGGGGTTCAAGTGCGGCATCAACTACCAGCCGCCCACTGTGG
TGCCCGGCGGCGACCTGGCCAAGGTGCAGAGGGCCGTCTGCATGATCTCCAACTCCACCA
GCGTCGTCGAGGTCTTCTCCCGCATTGACCACAAGTTCGACCTCATGTACGCCAAGCGCG
CCTTCGTCCACTGGTACGTGGGCGAGGGCATGGAGGAGGGCGAGTTCTCGGAGGCCCGTG
AGGACCTGGCCGCCCTGGAGAAGGACTACGAGGAGGTCGGCGCAGAGGGCGGCGACGACG
AGGATGGCGAGGAGGACGACGACTACTGATCTGCTCGTCCGCTCGACGGAGGATCCGTCT
CCTCTGCCGCCTATCTTTAACTACATGTTGCTTTGCCGTCCTGTTTTGGGGTGAGGTTGT
AAGCCATCGGTGCTTTCTATGTCGCTGTTGAACTGCATCATTAGTACTTCGTGGAACAAG
TATCTCGCTTAATTTGTTCAAAAAAAAAAAAAAAAAATTTCCGTTGCTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_14083 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g14220.1	452	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g07160.1	452
Arabidopsis v10	AT4G14960.2	450	\| Symbols: TUA6 \| Tubulin/FtsZ family protein \| chr4:8548769-8550319 REVERSE LENGTH=450