barSeed - Barley Seed Development Database

Probe CUST_6119_PI390587928

Source Contig U35_5089

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6119_PI390587928	Hv_44K_v2	GGAGGCATATAGTGTTGATAGAAACATATATATGACCTAGAGGCAATCATAGATGTAAAC	738	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.440	2.475	1.686	0.791	0.218	0.260
Raw	61.207	165.166	96.877	74.848	6.297	8.763

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366518	1724	2e-24	1598 - 1657	100	60 / 60	plus	ABC11332
MLOC	MLOC_12831.2	1821	2e-24	1029 - 1088	100	60 / 60	minus	ABC11332
JLOC1	JLOC1_8630.2	1750	8e-25	727 - 786	100	60 / 60	plus
Harvest21	ABC11332	882	3e-25	85 - 144	100	60 / 60	minus	ABC11332
Harvest35	U35_5089	882	3e-25	739 - 798	100	60 / 60	plus

Contig Sequence (882 bp)

>U35_5089 882 Hv_44K_v2
GGTCCACTATCACTGTATATTGCCTTTTCTCTCTTCAGGATGTGGCTTATGCAGAGGTAT
TCTCTCTTTGGGCTGTTAGTGACAGGAAATATGGTGGATTAAGCTTTACTTCTACAGATG
TAGGCCGTATCCTTGCACTCTCAGGTCTCTTCCTCCTAATATACCAGATTCTGATTTATC
CATCGGTAGCAAAAGCTATAGAACCTATTACATTAGTCCGTGCAACCGCGATCTTGACAC
TACCACTTCTTGCCAGCTATCCATTCATGACTACATTATATGGGTTCAATCTTCAGTTGG
TAGTAAATTGTGCATCTTCTCTTAAGAATTCCTTCCAAGTAACTACCATCACGGTGTGTA
ATATTTTAATGAATGATGCTGTGAGTCAGGACCTAAGAGCATCAGCCAATGGCCTTTCTG
TAACGCTAATGTCCATCTTCAAAGCTATCGCTCCGGCTGTTGCAGGTGTTATATTTTCAT
GGGCTCAAAGGCGCCAAAGTGCTTCATTTCTTCCAGGCGACCACCTTGTATTTTTCATGC
TTAATGCGGCCACCGTCGTTGGTCTTATGTGCACCTTCGGACCACACTTTGCTAGGGGCA
ACATGAAGCATTGATGTAGTAATAATGTTGCGACCCGGGCAAGAACAAGGAACTATCGTT
CTATCTTGTGATCTTATTCCACTTAAGCATAGTATTTTGCTCCACACCACATGTTATTAT
TATTATTATGTGTAGTAGGGAGGCATATAGTGTTGATAGAAACATATATATGACCTAGAG
GCAATCATAGATGTAAACAATATTCATTTGTATTTACGGTTTATTAGGTCATGTCCATTA
AATAAAATCATGTCTATTGATGAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5089 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16260.2	415	5e-104	protein\|major facilitator superfamily antiporter, putative, expressed
Brachypodium v1_2	Bradi2g10027.2	492	5e-107
Arabidopsis v10	AT3G43790.3	484	6e-68	\| Symbols: ZIFL2 \| zinc induced facilitator-like 2 \| chr3:15655443-15658848 FORWARD LENGTH=484