barSeed - Barley Seed Development Database

Probe CUST_6115_PI390587928

Source Contig U35_5093

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6115_PI390587928	Hv_44K_v2	CTACATTGTGGATGAAATCCACATGAAATGAATATCATCGTTTTTGTTGGTGTTGAAGCA	1153	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.278	2.396	1.767	0.886	0.107	0.067
Raw	160.967	487.096	298.371	243.486	9.066	5.820

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62705.2	2278	2e-24	2185 - 2244	100	60 / 60	plus	ABC07074 ABC21024
MLOC	MLOC_62705.1	2632	2e-24	219 - 278	100	60 / 60	minus	ABC07074 ABC21024
JLOC1	JLOC1_41056.1	2474	8e-25	2193 - 2252	100	60 / 60	plus
Harvest21	ABC21024	310	3e-25	17 - 76	100	60 / 60	minus	ABC21024
Harvest35	U35_5093	1229	3e-25	1154 - 1213	100	60 / 60	plus

Contig Sequence (1229 bp)

>U35_5093 1229 Hv_44K_v2
TTCGGCACCGAGCGGCACGAGCTGAACCCAATCTCCGTTACAAACCTCCAATTCACGCCG
CCGTACATGATGCTTGCCCTGAAGACCGGCCTCATCACCGGCGTCATCGCCCTCGCCGAA
GGGATCGCCGTGGGTCGGAGCTTCGCCATGTTCAAGAACTACCACATCGACGGCAACAAG
GAGATGATCGCCATCGGGACGATGAACATCCTGGGCTCCTTCACCTCCTGCTACCTCACC
ACGGGCCCCTTCTCCCGGTCCGCCGTCAACTACAACGCCGGGTGCAAGACGGCCATGTCC
AACGTGATCATGTCGCTGGCGGTGATGGTGACGCTCCTCTTCCTGACGCCGCTCTTCCAC
TACACGCCGCTGGTGGTGCTGTCGGCGATCATCATGTCGGCGATGCTGGGGCTCATCGAC
TTCCCGGCCGCCGTCCACCTGTGGCACGTCGACAAGGTGGACTTCTGCGTCTGCGCGGGG
GCCTACCTCGGCGTCGTCTTCGGCAGCGTCGAGATGGGGCTGGTGGTGGCCGTGGCCATC
TCGGTGCTGCGGGTGCTGCTCTTCGTGGCGCGGCCGAGGACCACCGTGCTGGGCAACGTG
CCGGACACCAACGTCTACCGCCGGATGGACCAGTACACGACGGCGCGGACGGTGCCCGGC
GTGCTCGTGCTGCGCGTGGACTCCCCCATCTACTTCGCCAACTCTGGCTACCTCCGCGAG
AGGATCACCCGGTGGATCGACGACGACGACGAGCGGACCAGCGCCAAGGGCGAGACCGGC
GTGCAGTACGTCGTCCTCGACATGGGTGCGGTCGGCAGCATCGACACCAGCGGGACGAGC
ATGCTGGACGAGCTCAAGAAGACCCTGGACAGGAGGGGAATTCAGATCGTGCTGGCGAAC
CCGGGGAGCGAGATCATGAAGAAGCTGGACAGCTCCAAGGTGCTGGAGCTCATCGGCCAC
GAGTGGATCTTCCCGACGGTGGGCGAGGCCGTGGCGGAGTGCGACTTCGTGCTGCACTCG
CACAAGCCGGGCATGGTCTCCGGCAGTGCCACGCGCGAGAACATGGTCTGATTGGGTCTG
ACCTGACCTGAGTTGAGCTGCCAACAGGCAATGCAAGCCGAGATCAGTATAAACATCTCG
TGCTATTGTACTCCTACATTGTGGATGAAATCCACATGAAATGAATATCATCGTTTTTGT
TGGTGTTGAAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5093 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g06520.2	534	0.0	protein\|sulfate transporter, putative, expressed
Brachypodium v1_2	Bradi1g74420.1	668	0.0
Arabidopsis v10	AT3G51895.1	658	6e-167	\| Symbols: SULTR3;1, AST12 \| sulfate transporter 3;1 \| chr3:19251503-19255677 REVERSE LENGTH=658