barSeed - Barley Seed Development Database

Probe CUST_6110_PI390587928

Source Contig U35_5098

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6110_PI390587928	Hv_44K_v2	GTCACTTGTAAATCAATTATGGTTGAATTAAAAGGGCGTGGATGCCACAAAATATAAGCA	425	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354338	2273	2e-24	2200 - 2259	100	60 / 60	plus	ABC04521 ABC13653 ABC46696
Harvest35	U35_5098	505	3e-25	426 - 485	100	60 / 60	plus

Contig Sequence (505 bp)

>U35_5098 505 Hv_44K_v2
GCCTCGTGCCGATTCGGCACGAGGAGGATTTCTCCGTCAGGGTGCTCGTGGATCACTCTA
TCGTGCAGAGCTTTGTGATGGGCGGGAGGTTGACGGCGACGTCGAGGGCGTACCCGACGG
AGGCAATTTATGCGGCGGCGGGGGTCTACCTGTTCAACAATGCCACCAGCGCCGCCGTCA
TCGCTGAGAAGCTCGTCGTGCACGACATGGACTCGTCGTACAACCAGATATTCACAGACG
ACGACTTGGTAATCGTCGATTAGACTGATCACTTACAACAAGTTTTGAATTTTTTTGTTC
GGTCTGTTGCTTCCTTTTTCTCTTGGACACATAGTGGTGGAGTACCAGCCACTCATCTAC
CTATCATCTTGATTTATGTTCCTTGTTCTAGTTTTGGTTTTAGTAAGATGAATTAGATGA
TGTTCGTCACTTGTAAATCAATTATGGTTGAATTAAAAGGGCGTGGATGCCACAAAATAT
AAGCAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_5098 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None