barSeed - Barley Seed Development Database

Probe CUST_6109_PI390587928

Source Contig U35_5099

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6109_PI390587928	Hv_44K_v2	TTGTGATAGCTGGTCACTCATTTTTGTTTGAGCATATACTGTGATGGAATTCTCGGAAAC	1032	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54980.1	2661	2e-24	2487 - 2546	100	60 / 60	plus	ABC12326
JLOC1	JLOC1_35434.1	2817	8e-25	2545 - 2604	100	60 / 60	plus
Harvest21	ABC12325	1152	3e-25	1033 - 1092	100	60 / 60	plus
Harvest35	U35_5099	1152	3e-25	1033 - 1092	100	60 / 60	plus

Contig Sequence (1152 bp)

>U35_5099 1152 Hv_44K_v2
GATTGCTGTATCTGCTACAGTAAAGAATCTGACAACATTGATCCGGTCAAAAAGCAAAAG
TCCACAGACTACAGGAAAAACAACAGGCTCGAAGGCAGCTGCAAAGGGAGCAGTTGATCA
ACCCTTGCCTTTCCAACATAATGTGGCTGTTGCTTTACTTGTGGGCGCTTTCTACTTGCT
CAGTAGATATGCCATACACTGCACTTGGGTAACCTCTGAGGCTTACTCTTCTCCTTCCAT
CGTTTTGTCCGCAAGGGGTCACAATGGAGGAAGGGTTATATTTGATGATTATCGTGAGGC
ATACTACTGGCTTCGTCAGAACACTCCTACAGATGCCAAGATTATGTCATGGTGGGACTA
TGGGTACCAAATTACAGCCATGGGTAACAGAACTGTTATTGTTGATAATAACACGTGGAA
TAATACACACATCGCAACTGTTGGACGGGCAATGTCATCTTATGAAGACGAGGCATATGA
GATAATGCAGTCATTGGACGTGAATTATGTGCTTGTCGTATTTGGAGGTGTTACAGGGTA
CTCCTCTGACGACATCAATAAGTTCTTATGGATGGTCCGTATTGGTGGAGGAGTTTTTCC
TGTAATCAAAGAGCCTGATTACCTTGTCAATGGGGAATATCGTGTTGACAAGGGGGCATC
GCCAAAAATGTTGAACTGTCTAATGTACAAACTCTGTTATTATCGATTTGGCGAACTGAC
CACGGAATATGGAAAACCTCCAGGATACGACCGAGTGCGAGGAGTGGAGATAGGCAATAA
AGACGTGAAGCTTGAGTACTTGGAGGAGGCATTCACAACATCAAACTGGATAGTGCGCAT
ATACAAGGTCAAACCTCCAAAGAATAGATCCTAAGGTTTCGTCCCAGGAGGGAAGCGGCA
AGACAGAGAGAACGGTTTGGGGGTGATTGCTTTGACATTGGTCACATGAGGAGGGTGCCT
AGTCGTGAACCTTTTGTTTTTGCAAGACTAACAGTAACTCATACTGTTGTTTCAAAGTTG
AGGACCTGGTAGTTGTGATAGCTGGTCACTCATTTTTGTTTGAGCATATACTGTGATGGA
ATTCTCGGAAACTTTTGGGTAGCAAGTAATTTTAGATCAATATGCCAGTTGACATTCCCT
GGTGTTGGGTGT

Homology of Contig U35_5099 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57890.1	722	0.0	protein\|oligosaccharyl transferase, putative, expressed
Brachypodium v1_2	Bradi5g26030.1	724	0.0
Arabidopsis v10	AT1G34130.1	735	2e-173	\| Symbols: STT3B \| staurosporin and temperature sensitive 3-like b \| chr1:12430000-12432985 FORWARD LENGTH=735