barSeed - Barley Seed Development Database

Probe CUST_6107_PI390587928

Source Contig U35_10102

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6107_PI390587928	Hv_44K_v2	CTTTGGTGGCGTGATTTGATTTATCATAATAATCTAGCCGTTGACAGTCGCTGTAAAAAA	513	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.628	1.532	1.120	0.706	0.266	0.320
Raw	1706.680	2484.562	1594.100	1593.083	210.623	274.379

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4771.1	1414	1e-22	1305 - 1360	100	56 / 56	plus
Harvest21	ABC26289	583	3e-25	12 - 71	100	60 / 60	minus	ABC26289
Harvest35	U35_10102	584	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_10102 584 Hv_44K_v2
CGACAAGTACATAGTGAAGGCTGGCGAAAAGCGAGGAAAGGGCTTGTTCAGCTTCTTCCG
CCGCCAGCCTCAGAAGATAGCGGTGAAGGGGATCACCGACGAGTTGATCCGGGAGGCTGC
TGCCAAGACCGACGGCTTTTTTGGAAGAGAGATTGCAAAGCTGATGGCGAGCGTGCAGGC
TGCCGTGTACGGAAGCACGGAATGTGAGCTCACCCCGGGCCTGTTCCGCGAGGTCGTAGA
TTACAAGGCCGCCGAGCACCAGCAGAGGCGAAAGATAGCTGGTCATGCCTAGGAGTAGAT
TGTTACAATGTTCATTTCTGGAGAGGGAGAGAGTGCCTGGACTGGGGCCGGGTGATTCAC
CTGCCTCGTCTTGGCTGATTCTTTTTTGCTTGCTATGTCCTGACACCTGGGCGGAATTTT
GGAGGCTTGCATGTATCAACAACGTCAACATGGCGCAGTTCACTTCAACAAGCTCGGCAA
TTTTCTGTTCTATTTGTCCACATGTACGCTAGCCTTTGGTGGCGTGATTTGATTTATCAT
AATAATCTAGCCGTTGACAGTCGCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g52367.2	641	6e-51
Arabidopsis v10	None