barSeed - Barley Seed Development Database

Probe CUST_6101_PI390587928

Source Contig U35_10108

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6101_PI390587928	Hv_44K_v2	AATTATTCCGTGACACCAAGCTGGTCTGGTCTCTAGATGTACATAGGATGTCAGTTGGTG	1164	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15169.1	2955	2e-24	1137 - 1196	100	60 / 60	minus	ABC13447
JLOC1	JLOC1_10388.2	2875	8e-25	1764 - 1823	100	60 / 60	plus
JLOC1	JLOC1_10388.1	2873	8e-25	1759 - 1818	100	60 / 60	plus
Harvest21	ABC23555	876	3e-25	808 - 867	100	60 / 60	plus
Harvest35	U35_10108	1233	3e-25	1165 - 1224	100	60 / 60	plus

Contig Sequence (1233 bp)

>U35_10108 1233 Hv_44K_v2
CAGCAGCAGCGAGATGANCCCGAGAAGCATCAGCTCTGCATTGCGCCAAGGAGCAGTTGA
TGATAGATACATCCAACATGGAAGACAGGTACAACCATGCAATGTCAAATTTCAAAAAGA
GAAGACACATAAAGTGATTGGTACAGTAGCCTTTTGACTATTTCTCACAAGGGAACAGTT
GGAGACGTCCCTGCTGAGAGCCAGCAACCCCACCCAATTACCCATGGTGCAGGGATAAAA
AGAGATGTACGCCTTTTGCACAGACCGCACCACCATGATTTTGTCGACATGATAGTACTT
TAGCGGCCGCTGAACCTGACATGGAGACCTGTGAAGGTGTCTTGGCTGCGTGTGGTCAGG
GTGGTCTCCATGAGGATGCAAGAGAAGTTCTTGACTACATAACCAAAGAAGGAATGGTGC
CTACTGCAAAGGCCTACACTGGCCTAATTGAAGCCCTCGGTCATGCAGCTATGTATGAGG
AGGCCTATGTTGCATTCAACATGATGACTGAAATTGGTAGCTTGCCAACGATAGAGACGT
ACAATTCTCTTGCAAATGTGTTTGCCAAGGGCGGGCTCTTCCGGGAGGCTGAGTCCGTCT
TTTCTCGGATGACCAACAGTGCTGGTATTCAGAAAAGCAAAGATTCATATGATGCCCTCA
TCGAAGCATATTGCCAGGGTTCACAGTTGGATGATGCAGTGAAGGCATACATGGAGATGC
GCAAGTCTAGGTTTAACCCTGATGAACGCTCCCTTGAGGGAGTACTCAATGCCTACTGCA
TAGCGGGCGTTATAGATGAGAGCAAAGAGCAGTTTGAAGAGATCAGATCCAACATGGCTG
TGCCTAGCATTATTGCTTATTGCATGATGCTGTCACTCTATGCAAGGAACGACAGGTGGG
CTGATGCTTATGATTTGCTGGAAGAAATGAAAACAAATCGTGCTAGTAATACACATCAAG
TGATTGCTTCCATGATAAAGGGGGAGTACGATGATAGCTCTAATTGGCAAATGGTTGAAT
ATGTCCTTGACAGCAGTAACTTGGAAGGATGTGACTACAGTTTACGATTTTTTAATGCTC
TCCTTGATGTGCTTTGGTGGTTCGGCCAGAAGGCTCGGGCTGCAAGGGTTCTAGATCATG
CAGTAAGTTATGGGCTCTTCCCTGAATTATTCCGTGACACCAAGCTGGTCTGGTCTCTAG
ATGTACATAGGATGTCAGTTGGTGGAGCATTAG

Homology of Contig U35_10108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60910.1	869	0.0	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g03450.1	863	0.0
Arabidopsis v10	AT1G74850.1	862	4e-129	\| Symbols: PTAC2 \| plastid transcriptionally active 2 \| chr1:28119237-28122314 REVERSE LENGTH=862