barSeed - Barley Seed Development Database

Probe CUST_609_PI390587928

Source Contig U35_14085

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_609_PI390587928	Hv_44K_v2	CTGTTGAACTGCATCATTAGTACTTCGTGGAACAAGTATCTCGCTTAATTTGTTCTGTCC	1310	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52788.2	2256	2e-24	1618 - 1677	100	60 / 60	plus	ABC00127 ABC00169 ABC00333 ABC00902 ABC00930 ABC50944
Harvest21	ABC50515	645	3e-25	101 - 160	100	60 / 60	minus
Harvest21	ABC38886	140	3e-25	24 - 83	100	60 / 60	minus
Harvest21	ABC29944	160	3e-25	56 - 115	100	60 / 60	plus
Harvest21	ABC00902	1661	3e-25	1568 - 1627	100	60 / 60	plus	ABC00902
Harvest21	ABC00674	1737	5e-23	1585 - 1640	100	56 / 56	plus
Harvest21	ABC00169	667	2e-22	18 - 72	100	55 / 55	minus	ABC00169
Harvest21	ABC52941	477	6e-22	16 - 75	97	58 / 60	minus
Harvest35	U35_38629	693	3e-25	140 - 199	100	60 / 60	minus
Harvest35	U35_14085	1470	3e-25	1311 - 1370	100	60 / 60	plus
Harvest35	U35_14083	1685	2e-22	1585 - 1639	100	55 / 55	plus
Harvest35	U35_14074	710	2e-22	639 - 693	100	55 / 55	plus

Contig Sequence (1470 bp)

>U35_14085 1470 Hv_44K_v2
CAAGTACGTGCCCCGTGCAGTCTTCGTCGATCTCGAGCCCACCGTGATTGACGAGGTCCG
CACCAGCGCCTACCGCCAGCTCTTCCACCCCGAGCAGCTCATCAGCGGCAAGGAGGACGC
AGCCAACAACTTCGCCCGTGGTCACTACACAATCGGCAAGGAGATTGTGGATCTCTGCCT
GGACCGCATCCGCAAGCTGGCCGATAACTGCACTGGCCTGCAGGGCTTCCTGGTCTTCAA
CGCCGTCGGCGGTGGAACCGGGTCTGGGCTTGGGTCGCTCCTTCTCGAGCGCCTGTCTGT
TGACTATGGAAAGAAGTCCAAGCTCGGGTTCACCGTTTACCCATCTCCTCAGGTGTCGAC
CTCTGTGGTCGAGCCCTACAACAGTGTGCTGTCCACCCACTCTCTGCTGGAGCACACCGA
TGTCTCCATCCTGCTCGACAACGAGGCCATCTACGACATCTGCAGGCGCTCCCTGGACAT
TGAGAGGCCCACCTACACCAACCTGAACCGCCTCGTCTCTCAGGTGATCTCATCACTGAC
CACATCCCTGAGGTTCGACGGTGCCCTGAACGTGGACGTGACTGAGTTCCAGACCAACCT
TGTCCCGTACCCGAGGATCCACTTCATGCTCTCGTCCTACGCGCCGGTCATCTCGGCGGA
GAAGGCGTACCACGAGCAGCTGTCGGTGTCGGAGATCACCAACAGCGCGTTCGAGCCGTC
GTCCATGATGGCCAAGTGCGACCCTCGCCACGGCAAGTACATGGCGTGCTGCCTCATGTA
CCGGGGCGACGTGGTGCCCAAGGACGTGAACGCGGCCGTGGCCACCATCAAGACCAAGCG
CACCATCCAGTTCGTGGACTGGTGCCCCACGGGGTTCAAGTGCGGCATCAACTACCAGCC
GCCCACCGTGGTGCCCGGCGGCGACCTGGCCAAGGTGCAGAGGGCGGTCTGCATGATCTC
CAACTCCACCAGCGTCGTCGAGGTCTTCTCCCGCATTGACCACAAGTTCGACCTCATGTA
CGCCAAGCGCGCCTTCGTCCACTGGTACGTGGGCGAGGGCATGGAGGAGGGCGAGTTCTC
GGAGGCCCGTGAGGACCTGGCCGCCCTGGAGAAGGACTACGAGGAGGTCGGTGCAGAGGG
CGGCGACGACGAGGATGGCGAGGAGGACGACGACTACTGATCTGCTCGTCCGCTCGACGG
AGGATCCGTCTCCTCTGCCGCCTATCTTTTAACTACATATTGGTTTGCCGTCCTGTTTTG
GGAACTTATGTGCTGGGTGAGGTTGTAAGCCATCGGTGCTTTCTATGTCGCTGTTGAACT
GCATCATTAGTACTTCGTGGAACAAGTATCTCGCTTAATTTGTTCTGTCCAAATTAAAAA
AAAAATTATTTGCCGTCCTGTCTTGGTTAAAAAAAAAAAAAAAAAAATTGAATTTGATTA
GCCCCGACGGTGGTCTAGTGTATGCCCCGT

Homology of Contig U35_14085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g51600.1	452	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g07160.1	452
Arabidopsis v10	AT4G14960.2	450	\| Symbols: TUA6 \| Tubulin/FtsZ family protein \| chr4:8548769-8550319 REVERSE LENGTH=450