barSeed - Barley Seed Development Database

Probe CUST_6098_PI390587928

Source Contig U35_10111

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6098_PI390587928	Hv_44K_v2	GAGGCCATGATCTCGTATATCGTGTTCAAATAAGATGAGGTGAAGAATTCAGCTACTAAA	657	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.253	1.335	1.349	1.036	0.368	0.380
Raw	991.342	1712.107	1497.413	1821.037	225.569	254.132

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57285.1	4013	7e-23	2058 - 2114	100	57 / 57	minus	ABC11346 ABC20133
JLOC1	JLOC1_37104.1	4090	4e-23	1941 - 1997	100	57 / 57	plus
Harvest21	ABC20133	731	3e-25	15 - 74	100	60 / 60	minus	ABC20133
Harvest35	U35_10111	731	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_10111 731 Hv_44K_v2
GACTCAATGCCATACAGTCTCCTCTACTTGATATTGGTATTGAAAGAGCAACAGGAATTG
TGTGGAATATCACTGGAGGGAGCGACCTAACATTGACAGAGGTGAATGCAGCAGCTGAAG
TGATATATGATCTCGTCGATCCTGGGGCAAATCTAATATTTGGCTCTGTCATAGACCCGT
CATATACTGGCCAGGTGAGCATTACTTTGATTGCAACTGGATTCAAGCGCCAGGAGGAAA
GCGAAGGCCGGCCCGCGCAGGCTGGAGGCGACGGCAACCGCGGCCGTGGCGGCTCCCGGT
TCTCTTCGCCCTCCCAGGACGAAGGCCCGAAGCTGCAGATTCCCGAGTTCCTGCAGCGGA
AAGGGCGTTCAGGGTTTTCCAGAGGCTAGAGCATTTTTTTCTTTTCTTTTCTTTTCCCCA
GCGTCATGAGCTTCTCAGTTCTCGTAGCGGTAGACTCGTAGTTACCATGTCTTTCTTCTT
TGCTTCCTCTGGTTGCAAGCTTTAGGCGATATAGACTTGTAGACCGTGTGTGTGATAGCA
TTAGAGTGCGTATGAAACGCGTATCGTATCAGCGTGTAACCATTCATGGCGGTCTCTTGT
CAGCCGTCAGATGGCTCTGTTCGGAGCTTGCTTGTTCCTGGATGGCTGGATTACATCGAG
GCCATGATCTCGTATATCGTGTTCAAATAAGATGAGGTGAAGAATTCAGCTACTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_10111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g23900.1	474	9e-53
Arabidopsis v10	None