- Probe CUST_6095_PI390587928
- Source Contig U35_10114
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6095_PI390587928 | Hv_44K_v2 | AAGGCGGTTACTCCCATGCTCCAGATGAACTCACCTATGGGGTTGACATGAAGCACATAA | 483 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.518 | 0.940 | 2.080 | 2.113 | 1.136 | 0.940 |
| Raw | 5.441 | 16.479 | 33.587 | 52.433 | 10.378 | 8.721 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54110.4 | 1963 | 2e-24 | 516 - 575 | 100 | 60 / 60 | plus | ABC08522 ABC40949 |
| MLOC | MLOC_54110.2 | 2284 | 2e-24 | 1555 - 1614 | 100 | 60 / 60 | minus | ABC08522 ABC40949 |
| MLOC | MLOC_54110.3 | 2654 | 2e-24 | 1507 - 1566 | 100 | 60 / 60 | minus | ABC08522 ABC40949 ABC45673 |
| MLOC | MLOC_54110.5 | 2502 | 2e-24 | 1355 - 1414 | 100 | 60 / 60 | minus | ABC08522 ABC40949 ABC45673 |
| MLOC | MLOC_54110.1 | 2550 | 2e-24 | 1904 - 1963 | 100 | 60 / 60 | minus | ABC08522 ABC40949 |
| JLOC1 | JLOC1_34819.4 | 3971 | 8e-25 | 2280 - 2339 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34819.3 | 4020 | 8e-25 | 2280 - 2339 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34819.2 | 3759 | 8e-25 | 2280 - 2339 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34819.1 | 3953 | 8e-25 | 2280 - 2339 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20652 | 542 | 1e-24 | 484 - 542 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_10114 | 543 | 3e-25 | 484 - 543 | 100 | 60 / 60 | plus |
Contig Sequence (543 bp)
>U35_10114 543 Hv_44K_v2 TTCTTCTTCTCCCTCCTCTTATCTCCTGTCCCCGTCCGCATTCCCGCACGTTCGTTCTTG TTCCTTTCTTGATGGACGGGGGGCAGAGCGTCGCCAAGCGGCACGCCGCCGGCGCCGAGG AGGACCCTGACCGGCACCGCACTCCTCCTCCTGTCCATGCGGCGGCGGATGATCTTGACG ACGATGGCGAAAAGAAGGCGTCTCGCCCCAGCAGCAGCAGCAGGCGGGTCGCCTCCCTCG ACGTCTTCCGCGGCCTCACCGTCGCTCTGATGATACTGGTGGACGGCGCCGGCGGCGAGT GGCCGGTCATCGGCCACGCGCCGTGGCACGGCTGCAACCTCGCCGACTTCGTCATGCCCT TCTTCCTCTTCATCGTCGGCATGGCCGTCCCCCTCTCCCTCAAGAGAATTCCAGACCGCG GCCGGGCCGTCAGGAGGGTGGTCATAAGAACGCTGAAGCTGCTCTTCTGGGGGATCTTGC TGCAAGGCGGTTACTCCCATGCTCCAGATGAACTCACCTATGGGGTTGACATGAAGCACA TAA
Homology of Contig U35_10114 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g70550.1 | 489 | 2e-76 | protein|heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed |
| Brachypodium v1_2 | Bradi2g59690.1 | 486 | 2e-75 | |
| Arabidopsis v10 | None |