barSeed - Barley Seed Development Database

Probe CUST_6090_PI390587928

Source Contig U35_10120

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6090_PI390587928	Hv_44K_v2	TTGATTTATCAGAATTGGAGAGCCTTTTTCCAGCAGCCGTACCGAAAACGGATAACACCT	540	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.436	1.191	1.161	0.804	0.381	0.460
Raw	52.732	58.485	58.065	55.132	11.234	13.818

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61255.3	6438	2e-24	4560 - 4619	100	60 / 60	plus	ABC17845
MLOC	MLOC_61255.4	6169	2e-24	4290 - 4349	100	60 / 60	plus	ABC17845
MLOC	MLOC_61255.1	6697	2e-24	4872 - 4931	100	60 / 60	plus	ABC17845
MLOC	MLOC_61255.2	6391	2e-24	4566 - 4625	100	60 / 60	plus	ABC17845
JLOC1	JLOC1_40025.2	5809	8e-25	3875 - 3934	100	60 / 60	plus
JLOC1	JLOC1_40025.1	6218	8e-25	4284 - 4343	100	60 / 60	plus
Harvest21	ABC20969	613	3e-25	541 - 600	100	60 / 60	plus
Harvest35	U35_10120	613	3e-25	541 - 600	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_10120 613 Hv_44K_v2
GAGGTGCACGTCCTGGCCCTCCACCTCCCCCGCCTCCTCCAGGCCGACCAGCAGCTCCAC
CTCCCCCACCTCCTCCAGGCCGACCAGGGGCTCCACCTCCCCCACCTCCTCCAGGCCGAC
CAGGAGCTCCACCTCCCCCACCTCCTCCAGGCAGACCAGGAGCTCCACCTCCCCCACCTC
CTCCAGGCCGACCAGGTGCTCCACCTCCCCCGCCTCCACCTGGAGCTGGAGGGAGAGCAC
CTCCACCACCACCTGCACCTGGAGGAAGGCTTGGTGGGCCTCCTCCACCTCCTCCTCCAG
GTGGCCGTGCACCAGCTCCTCCTAGAGCACCAGGCGCACCACCACCACCAGGAGGCAATC
CTACAAACTCCTTAGGTAGAGGGCGTGGAGCTGTACGACCTCCAGGGTCAGGTTTTGGGG
CTGCAGCCGCACGCAAATCAACATTAAAACCGCTGCATTGGGTCAAAGTGACAAGAGCTA
TGCAAGGTAGTCTCTGGGAGGAATTGCAGCGAAATGATGACCCACATAGTGTATCGGAGT
TTGATTTATCAGAATTGGAGAGCCTTTTTCCAGCAGCCGTACCGAAAACGGATAACACCT
NCAAAACTGACAG

Homology of Contig U35_10120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None