barSeed - Barley Seed Development Database

Probe CUST_6085_PI390587928

Source Contig U35_10125

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6085_PI390587928	Hv_44K_v2	GCATTGATGTGCTATCTATCGTGTAAATTGGTTCTTGAAATGCTGATGAAAGTGGATATA	439	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374572	1440	2e-24	1093 - 1152	100	60 / 60	plus	ABC11890 ABC39564 ABC48526 ABC48881
MLOC	MLOC_66620.1	995	2e-24	203 - 262	100	60 / 60	minus	ABC11890 ABC39564 ABC48526 ABC48881
JLOC1	JLOC1_43922.1	1143	8e-25	667 - 726	100	60 / 60	plus
Harvest21	ABC48526	386	3e-25	17 - 76	100	60 / 60	minus	ABC48526
Harvest35	U35_10125	581	3e-25	440 - 499	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_10125 581 Hv_44K_v2
GAAACTAGCCGCTTGCGCAGGTTTGGGTGCGGATGTATGCATAAACTACAAAACCGAAGA
CTTTGTAGCACGCATCAAAGAAGAAACTAATGGAAATGGTGTTGATGTTATTCTGGACAA
CGTCGGCGGACCTTATCTCCAGCGCAATCTGGAGAGCTTAGCAGTTGATGGCGATGCTTG
CCCGAAGATTGACCATACAAGTTGCTGGGCTGCGGAGCAGAAGCCTGGCCAATAAAGCTC
AGATCGTCAGCGCGGTGGAGAAAAATGTATGGCCAGCCGTTGCGTCGGGCAAGGTGAGGG
CGGTGGTTTACAAGACGCTCTCTCTATCTGAGGCAGCCGAAGCTCACAAGCTGATGGAGT
CAAGCTCCCACATTGGCAAGATCCTACTGATTCCATGACTGGGTATGGTATCCTTCAGCT
TTGAGCAGTGTGTAACTATGCATTGATGTGCTATCTATCGTGTAAATTGGTTCTTGAAAT
GCTGATGAAAGTGGATATATATATATTGAGAACCATTAGTAATAATAGGGATGAGCGGCC
GCTCGAGCATCTTGTAGAAGGCCCAATTCGCCCTATAGGAG

Homology of Contig U35_10125 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g56180.1	329	2e-53	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g54670.1	328	5e-52
Arabidopsis v10	None